View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9434_1 (Length: 481)

Name: NF9434_1
Description: NF9434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9434_1
NF9434_1
[»] chr5 (8 HSPs)
chr5 (7-363)||(35309147-35309515)
chr5 (197-480)||(35304559-35304844)
chr5 (197-361)||(31185993-31186160)
chr5 (281-363)||(39040539-39040620)
chr5 (282-363)||(25213827-25213907)
chr5 (282-363)||(25277977-25278057)
chr5 (197-242)||(41951858-41951903)
chr5 (329-363)||(27405306-27405340)
[»] chr2 (3 HSPs)
chr2 (200-363)||(6016847-6017013)
chr2 (197-361)||(36316286-36316455)
chr2 (282-316)||(12015132-12015166)
[»] chr8 (5 HSPs)
chr8 (197-364)||(11080141-11080313)
chr8 (281-363)||(4678162-4678243)
chr8 (281-361)||(4676217-4676296)
chr8 (200-242)||(5690727-5690769)
chr8 (282-357)||(37903-37976)
[»] chr7 (4 HSPs)
chr7 (197-364)||(7737277-7737450)
chr7 (236-361)||(36647489-36647617)
chr7 (236-364)||(48821854-48821985)
chr7 (282-363)||(35130603-35130683)
[»] scaffold0263 (1 HSPs)
scaffold0263 (236-364)||(22919-23049)
[»] chr4 (4 HSPs)
chr4 (197-363)||(27510483-27510655)
chr4 (196-365)||(13436432-13436606)
chr4 (197-276)||(5444688-5444770)
chr4 (197-272)||(35783689-35783767)
[»] chr3 (4 HSPs)
chr3 (194-363)||(39091329-39091492)
chr3 (282-363)||(35610885-35610966)
chr3 (282-363)||(27825693-27825773)
chr3 (329-363)||(33785893-33785927)
[»] chr1 (1 HSPs)
chr1 (197-363)||(41418053-41418223)
[»] chr6 (2 HSPs)
chr6 (197-276)||(23306795-23306877)
chr6 (236-318)||(9231526-9231610)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 35309515 - 35309147
Alignment:
Q  7 gtgagatgaagctggatactattaacaaataagaaattacacatatt------aagtcggtacgagagaaattggattcaaattatttaagtaagatt-c 99  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||| |||||||||||| |||||||||||||||||| |    
T  35309515 gtgaaatgaagctggatactattaacaaataagaaattacacatattcatattaagtcggtacgagtgaaattggattcgaattatttaagtaagatttc 35309416  T
Q  100 aagttcaagtctcatgaatgaaaaatgtagttgaaatgaagtatttggaactgagacctactttagatgatcaatcaaaattctccgattacgattatat 199  Q
    |||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  35309415 aagttcaagtttcatgaatgaaaaacgtagttgaaatgaaggatttggaactgagacctattttagatgatcaatcaaaattctccgattatgattatat 35309316  T
Q  200 tagagatacatgttagatactagttagcattaatca---agtagtatatatagatgtaaccacatcattagaaggta--tcttaatattgtaatattcac 294  Q
    |||||||| ||||||||||||| ||||||||| |||   |||||||||||||||||||||||| |||||| ||| ||  |||||  ||||||||||| ||    
T  35309315 tagagatatatgttagatactaattagcattagtcaaatagtagtatatatagatgtaaccacctcattataagctatctcttatcattgtaatatttac 35309216  T
Q  295 ttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||    
T  35309215 ttttatcatcaatagaaatattctatgaaatttttctcattccttcattggatatcatgtttcctaaca 35309147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 197 - 480
Target Start/End: Complemental strand, 35304844 - 35304559
Alignment:
Q  197 tattagagatacatgttagatactagttagcattaatcaagtagtatatatagatgtaaccacatcattagaaggtat--cttaatattgtaatattcac 294  Q
    |||| |||||| |||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||  ||||  ||| ||||||||||    
T  35304844 tatttgagatatatgttaaatactagttagcattagtcaagtagtatatatagatataaccacctcattagaaggtatttcttatcattataatattcac 35304745  T
Q  295 ttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaacagattataatcatcaacagaagtcagttggta 394  Q
    |||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35304744 ttttatcatcaatagaaatattctctgagattcttctcatttcttcattgaatatcatgtttcctaacacattataatcatcaacagaagtcagttggta 35304645  T
Q  395 cgttgcaccaatgtaataattaaaacaaaagacaaactccattaaaatttataataacaatttaatggctttatctaatgttgaga 480  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35304644 cgttgtaccgatgtaataattaaaacaaaagacaaactccattaaaatttataataacaatttaatggctttatctaatgttgaga 35304559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 361
Target Start/End: Complemental strand, 31186160 - 31185993
Alignment:
Q  197 tattagagatacatgttagatactagttagcatta---atcaagtagtatatatagatgtaaccacatcattagaaggtatct--taatattgtaatatt 291  Q
    ||||||||||| |||||||||||||||||||| ||   ||  |||||||||||||| ||||||||| ||||||||||||||||  ||  |||||||||||    
T  31186160 tattagagatatatgttagatactagttagcactagttatgtagtagtatatatagttgtaaccacctcattagaaggtatctcatatcattgtaatatt 31186061  T
Q  292 cacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaa 361  Q
    ||||||||||||||||||||||||  | | |  ||  |||||||||||| ||| ||||||||||||||||    
T  31186060 cacttttatcatcaatagaaatat--tatgagttttctctcattccttcgttggatatcatgtttcctaa 31185993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 39040620 - 39040539
Alignment:
Q  281 attgtaatattcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    |||||||||||||||||||||||||||||||| ||||||| |  ||  |||||||||||   || ||||||||||||||||||    
T  39040620 attgtaatattcacttttatcatcaatagaaacattctcttagttttctctcattcctt-tgtggatatcatgtttcctaaca 39040539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 363
Target Start/End: Original strand, 25213827 - 25213907
Alignment:
Q  282 ttgtaatattcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    |||||||||||||||| |||||||||| ||| ||| | |||  ||  ||||||||| |||||| ||||||||||||||||||    
T  25213827 ttgtaatattcacttt-atcatcaatacaaaaattatttaagttttctctcattccctcattggatatcatgtttcctaaca 25213907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 363
Target Start/End: Original strand, 25277977 - 25278057
Alignment:
Q  282 ttgtaatattcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    |||||||||||||||| |||||||||| ||| ||| | |||  ||  ||||||||| |||||| ||||||||||||||||||    
T  25277977 ttgtaatattcacttt-atcatcaatacaaaaattatttaagttttctctcattccctcattggatatcatgtttcctaaca 25278057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 41951903 - 41951858
Alignment:
Q  197 tattagagatacatgttagatactagttagcattaatcaagtagta 242  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||||    
T  41951903 tattagagatatatgttagatactagttagcattagtgaagtagta 41951858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 27405340 - 27405306
Alignment:
Q  329 tctcattccttcattgaatatcatgtttcctaaca 363  Q
    |||||||||||||||| ||||||||||||||||||    
T  27405340 tctcattccttcattggatatcatgtttcctaaca 27405306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 200 - 363
Target Start/End: Complemental strand, 6017013 - 6016847
Alignment:
Q  200 tagagatacatgttagatactagttagcattaatcaagtagta---tatatagatgtaaccacatcattagaaggtatct--taatattgtaatattcac 294  Q
    |||||||| ||||||||||||||||||||||| ||||||||||   ||||||||||||||||| ||||||||||||||||  ||  ||||||| ||||||    
T  6017013 tagagatatatgttagatactagttagcattagtcaagtagtagtatatatagatgtaaccacctcattagaaggtatctcttatcattgtaacattcac 6016914  T
Q  295 ttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    ||||||||||||||||||||||||   |  || ||| ||||||||||||| ||||||||||||||||||    
T  6016913 ttttatcatcaatagaaatattctg--agttttttcccattccttcattggatatcatgtttcctaaca 6016847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 197 - 361
Target Start/End: Complemental strand, 36316455 - 36316286
Alignment:
Q  197 tattagagatacatgttagatactagttagcattaatca---agtagtatatatagatgtaaccacatcattagaaggtatct--taatattgtaatatt 291  Q
    ||||||||||| |||||||||||||||||||| || | |   |||||||||||||| ||||||||| ||||||||||||||||  ||  |||||||||||    
T  36316455 tattagagatatatgttagatactagttagcactagttatatagtagtatatatagttgtaaccacctcattagaaggtatctcatatcattgtaatatt 36316356  T
Q  292 cacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaa 361  Q
    ||||||||||||||||||||||||| ||| |  ||  |||||||||||||||| ||||||||||||||||    
T  36316355 cacttttatcatcaatagaaatattgtctgagttttctctcattccttcattggatatcatgtttcctaa 36316286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 12015132 - 12015166
Alignment:
Q  282 ttgtaatattcacttttatcatcaatagaaatatt 316  Q
    ||||||||||||||||||||||||||| |||||||    
T  12015132 ttgtaatattcacttttatcatcaatacaaatatt 12015166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 364
Target Start/End: Original strand, 11080141 - 11080313
Alignment:
Q  197 tattagagatacatgttagatactagttagcattaatca---agtagtatatatagatgtaaccacatcattagaaggta--tcttaatattgtaatatt 291  Q
    ||||||||||| ||||||||||||||||||||||  |||   ||||||||||||||| ||||| || |||||||||||||  |||||  ||| |||||||    
T  11080141 tattagagatatatgttagatactagttagcatttgtcaagtagtagtatatatagaagtaactacctcattagaaggtatctcttatcattttaatatt 11080240  T
Q  292 cacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaacag 364  Q
    |||||||||||| |||||||||||||||  |  || ||||||||| ||||||| |||||||||||||||||||    
T  11080241 cacttttatcattaatagaaatattctccgagttttttctcattctttcattggatatcatgtttcctaacag 11080313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 363
Target Start/End: Original strand, 4678162 - 4678243
Alignment:
Q  281 attgtaatattcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    |||||||||||||||||||||||||||||||||||||||| |  ||  ||||||||||||  || ||||||||||||||||||    
T  4678162 attgtaatattcacttttatcatcaatagaaatattctcttagttttctctcattccttc-gtggatatcatgtttcctaaca 4678243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 4676217 - 4676296
Alignment:
Q  281 attgtaatattcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaa 361  Q
    |||||||||||||||||||||||||||||||||||||||| |  ||  ||||||||||||  || ||||||||||||||||    
T  4676217 attgtaatattcacttttatcatcaatagaaatattctcttagttttctctcattccttc-gtggatatcatgtttcctaa 4676296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 5690727 - 5690769
Alignment:
Q  200 tagagatacatgttagatactagttagcattaatcaagtagta 242  Q
    |||||||| ||||||||||||||||||||||| | ||||||||    
T  5690727 tagagatatatgttagatactagttagcattagtgaagtagta 5690769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 37903 - 37976
Alignment:
Q  282 ttgtaatattcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttc 357  Q
    |||||| ||||||||||||||| |||||||  | ||||| || ||  |||||||||||||||| ||||||| ||||    
T  37903 ttgtaacattcacttttatcataaatagaa--agtctcttaattttctctcattccttcattggatatcatatttc 37976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 197 - 364
Target Start/End: Original strand, 7737277 - 7737450
Alignment:
Q  197 tattagagatacatgttagatactagttagcattaatca---agtagtatatatagatgtaaccacatcattagaaggtatct--taatatt-gtaatat 290  Q
    ||||||||||| | |||||||||||||||| |||| |||   |||||||||||||  ||||| ||| |||||||||| |||||  ||  ||| |||||||    
T  7737277 tattagagatataggttagatactagttagtattagtcatgtagtagtatatataattgtaatcacctcattagaagatatctcttatcatttgtaatat 7737376  T
Q  291 tcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaacag 364  Q
    |||||||||||||||||||||| ||||||| |  ||  |||||||||||||||| |||||||||||||||||||    
T  7737377 tcacttttatcatcaatagaaagattctcttagttttctctcattccttcattggatatcatgtttcctaacag 7737450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 236 - 361
Target Start/End: Complemental strand, 36647617 - 36647489
Alignment:
Q  236 agtagtatatatagatgtaaccacatcattagaaggtatct--taatattg-taatattcacttttatcatcaatagaaatattctctaaaattcttctc 332  Q
    |||| ||||||||| || |||||| ||||||||||||||||  ||  |||  | ||||||| ||||||||||||||||||||||||||||  ||  ||||    
T  36647617 agtactatatatagttgaaaccacctcattagaaggtatctcttatcatttcttatattcatttttatcatcaatagaaatattctctaagttttctctc 36647518  T
Q  333 attccttcattgaatatcatgtttcctaa 361  Q
    |||| ||||||| ||||||||||| ||||    
T  36647517 attctttcattggatatcatgttttctaa 36647489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 364
Target Start/End: Complemental strand, 48821985 - 48821854
Alignment:
Q  236 agtagtatatatagatgtaaccacatcattagaaggtatctt--aatatt-gtaatattcacttttatcatcaatagaaatattctctaaaattcttctc 332  Q
    |||||||||||||| ||||||||| | ||||||||| |||||  |  ||| ||||||||||| ||||||||||||||||| ||||||| |  ||  ||||    
T  48821985 agtagtatatatagttgtaaccaccttattagaaggcatcttttaccatttgtaatattcacatttatcatcaatagaaaaattctctgagttttctctc 48821886  T
Q  333 attccttcattgaatatcatgtttcctaacag 364  Q
    ||| ||||  || |||||||||||| ||||||    
T  48821885 atttcttccatggatatcatgtttcataacag 48821854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 363
Target Start/End: Original strand, 35130603 - 35130683
Alignment:
Q  282 ttgtaatattcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    |||||||||||||||| |||||||||| ||| ||| | | |  ||  |||||||||||||||| ||||||||||||||||||    
T  35130603 ttgtaatattcacttt-atcatcaatacaaacattatttgagttttctctcattccttcattggatatcatgtttcctaaca 35130683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 236 - 364
Target Start/End: Original strand, 22919 - 23049
Alignment:
Q  236 agtagtatatatagatgtaaccacatcattagaaggta--tcttaatattgtaatattcacttttatcatcaatagaaatattctctaaaattcttctca 333  Q
    |||||||||||||  ||||||||| |||||||||||||  |||||  |||||||||||||||||||||||||||||||||||| | | |  ||  |||||    
T  22919 agtagtatatatacttgtaaccacctcattagaaggtagctcttatcattgtaatattcacttttatcatcaatagaaatattatttgagttttctctca 23018  T
Q  334 ttccttcattgaatatcatgtttcctaacag 364  Q
    ||||||||||| |||||||||||||||||||    
T  23019 ttccttcattggatatcatgtttcctaacag 23049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 197 - 363
Target Start/End: Complemental strand, 27510655 - 27510483
Alignment:
Q  197 tattagagatacatgttagatactagttagcattaatcaagtagta---tatatagatgtaaccacatcattagaaggtatctta-ata--ttgtaatat 290  Q
    ||||||||||| | |||||||||||||||| |||| ||| ||||||   ||||||| ||||| ||| ||||||||||| | |||  ||   |||||||||    
T  27510655 tattagagatataggttagatactagttagtattagtcatgtagtagtgtatatagttgtaatcacctcattagaaggaacctttgatcatttgtaatat 27510556  T
Q  291 tcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    |||||||||||||||||||||| ||||||| |  ||  |||||||||||||||| ||||||||||||||||||    
T  27510555 tcacttttatcatcaatagaaagattctcttagttttctctcattccttcattggatatcatgtttcctaaca 27510483  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 13436606 - 13436432
Alignment:
Q  196 atattagagatacatgttagatactagttagcattaatcaagtagta---tatatagatgtaaccacatcattagaagg-tatcttaata--ttgtaata 289  Q
    |||||||||||| |||||||||||| |||||||| | | ||||||||   ||||||| |||||| |  |||||||  || || ||| ||   ||||||||    
T  13436606 atattagagatatatgttagatactggttagcataagtgaagtagtagtatatatagttgtaacaatctcattagtgggataacttcatcatttgtaata 13436507  T
Q  290 ttcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaacaga 365  Q
    ||||||||||||||||||| ||||| ||| | |  ||  |||||||||||  || |||||||||||||||||||||    
T  13436506 ttcacttttatcatcaataaaaataatct-tgagttttctctcattcctttcttaaatatcatgtttcctaacaga 13436432  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 5444688 - 5444770
Alignment:
Q  197 tattagagatacatgttagatactagttagcattaatcaagta---gtatatatagatgtaaccacatcattagaaggtatct 276  Q
    ||||||||||| |||||||| | ||||||| |||| | |||||   |||||||||| ||||||||| ||||||||||||||||    
T  5444688 tattagagatatatgttagagattagttagtattagttaagtagtagtatatatagttgtaaccacctcattagaaggtatct 5444770  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 35783689 - 35783767
Alignment:
Q  197 tattagagatacatgttagatactagttagcattaatcaagta---gtatatatagatgtaaccacatcattagaaggt 272  Q
    ||||||||||| |||||||||| ||||||| |||| | |||||   |||||||||| ||||||||| ||||||||||||    
T  35783689 tattagagatatatgttagatattagttagtattagttaagtagtagtatatatagttgtaaccacctcattagaaggt 35783767  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 194 - 363
Target Start/End: Complemental strand, 39091492 - 39091329
Alignment:
Q  194 ttatattagagatacatgttagatactagttagcattaatcaagtagtatatatagatgtaaccacatcattagaaggtatctt--aatattgtaatatt 291  Q
    |||||||||||||| |||||||||||||||| | |        ||||||||||||  ||||||||| |||| ||||||||||||  |  |||||||||||    
T  39091492 ttatattagagatatatgttagatactagtttgta--------gtagtatatatatttgtaaccacctcatcagaaggtatcttttatcattgtaatatt 39091401  T
Q  292 cacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    ||||| ||||||||||||||||||| | | |  ||  |||||||||||||||| |||||||||||| |||||    
T  39091400 cacttctatcatcaatagaaatattatttgagttttctctcattccttcattggatatcatgtttcataaca 39091329  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 363
Target Start/End: Original strand, 35610885 - 35610966
Alignment:
Q  282 ttgtaatattcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    ||||||| |||| ||||||||||||||||| |||||| | |  ||  |||||||||||||||| ||||||||||||||||||    
T  35610885 ttgtaattttcaattttatcatcaatagaagtattctttgagttttctctcattccttcattggatatcatgtttcctaaca 35610966  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 27825773 - 27825693
Alignment:
Q  282 ttgtaatattcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    |||||||||||||||| |||||||||| ||| ||| | | |  ||  |||||||||||||||| ||||||||||||||||||    
T  27825773 ttgtaatattcacttt-atcatcaatacaaagattatttgagttttctctcattccttcattggatatcatgtttcctaaca 27825693  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 33785893 - 33785927
Alignment:
Q  329 tctcattccttcattgaatatcatgtttcctaaca 363  Q
    |||||||||||||||| ||||||||||||||||||    
T  33785893 tctcattccttcattggatatcatgtttcctaaca 33785927  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 363
Target Start/End: Original strand, 41418053 - 41418223
Alignment:
Q  197 tattagagatacatgttagatactagttagcatta---atcaagtagtatatatagatgtaaccacatcattagaaggtatct-taat--attgtaatat 290  Q
    ||||||||||| |||||||||||||||||||| ||   || ||||||||||||||| | ||||||| ||||||||||| |||| | ||   |||||||||    
T  41418053 tattagagatatatgttagatactagttagcactagtcataaagtagtatatatagttctaaccacctcattagaaggcatctcttatcatttgtaatat 41418152  T
Q  291 tcacttttatcatcaatagaaatattctctaaaattcttctcattccttcattgaatatcatgtttcctaaca 363  Q
    ||||||||||||||||| |||| | ||| ||   ||| ||| |||||||||||| ||||||||||||||||||    
T  41418153 tcacttttatcatcaattgaaagaatct-tagttttc-tctaattccttcattggatatcatgtttcctaaca 41418223  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 23306795 - 23306877
Alignment:
Q  197 tattagagatacatgttagatactagttagcattaatc---aagtagtatatatagatgtaaccacatcattagaaggtatct 276  Q
    ||||||||||| ||||||||||||||||||||||| ||   |||||||||| | || ||| ||||| ||||||||||||||||    
T  23306795 tattagagatatatgttagatactagttagcattagtcacaaagtagtatagaaagttgtcaccacctcattagaaggtatct 23306877  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 9231526 - 9231610
Alignment:
Q  236 agtagtatatatagatgtaaccacatcattagaagg-tatcttaata-ttgtaatattcacttttatcatcaatagaaatattct 318  Q
    |||||||||||||| |||| |||| |||||||| || | |||||  | ||||||||||||||||||||||||||||||| |||||    
T  9231526 agtagtatatatagttgtagccacctcattagagggatctcttatcacttgtaatattcacttttatcatcaatagaaagattct 9231610  T

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