View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9434_2 (Length: 320)
Name: NF9434_2
Description: NF9434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9434_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 35309877 - 35309558
Alignment:
| Q |
1 |
acactactttattgtggatatctaataggtatcactttcaagctatgattctctagttcttccaagaagattccttccactgaattggactctcaagtct |
100 |
Q |
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| T |
35309877 |
acactactttattgtggatatctaataggtatcactttcaagctatgattctctagttcttccaagaagattccttccactgaattggactctcaagtct |
35309778 |
T |
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| Q |
101 |
aattgattgacaccattcaccacctactaaacctatcattggtataaacatatatacttgaaattttagtcactctttgttgccatcatgtcattcaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35309777 |
aattgattgacaccattcaccacctactaaacctatcattggtataaacatatatacttgaaattttagtcactctttgttgccatcatgtcattcaact |
35309678 |
T |
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| Q |
201 |
cattaggtggagctgcttatagccagaattgtgcttaggaggtgtgagaataataggttgtgaaaaatcaaatcattccaaaagtttaaaacatttttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35309677 |
cattaggtggagctgcttatagccagaattgtgcttaggaggtgtgagaataataggttgtgaaaaatcaaatcattctaaaagtttaaaacatttttct |
35309578 |
T |
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| Q |
301 |
atgcttgaaaaatgtgagtt |
320 |
Q |
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||||||||| |||||||||| |
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| T |
35309577 |
atgcttgaataatgtgagtt |
35309558 |
T |
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