View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9435_1 (Length: 1331)
Name: NF9435_1
Description: NF9435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9435_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 1075; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 1075; E-Value: 0
Query Start/End: Original strand, 1 - 1309
Target Start/End: Complemental strand, 25788806 - 25787506
Alignment:
| Q |
1 |
ggaattgagatcatcaaagggtctttccaaatttgagatgaaattattggaaagattcagataaaccagatagtcgaatctcaatatccagattggtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
25788806 |
ggaattgagatcatcaaagggtctttccaaatctgtgatgaaattattggaaagattcagataaaccagatagttgaatctcaatatccagtttggtatt |
25788707 |
T |
|
| Q |
101 |
gctccatgaatgtagttgttggataagtctaggccattttagatggggttgatttctcatgaactttggaaattccctcaacttacaagaagctaacaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
25788706 |
gctccatgaatgtagttgttggataagtctaggccattt-agatggggttgatttctcaagaactttggaaactccatcaacttacaagaagctaacaac |
25788608 |
T |
|
| Q |
201 |
agatatttcatctttggaaaggatgaaaggccatcatgattttcattgaaagttatatcaactgacaaattgttgtatgagaggcctaatgtatttaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25788607 |
agatatttcatctttggaaaggatgaaaggccatcatgattttcattgaaagttatatcaactgacaaattgttgtatgagaggcctaatgtatttaaac |
25788508 |
T |
|
| Q |
301 |
tctgcagcctctgaatcatgtcaagccgcattgtgccattggtcaagccgcatccca-caaattatggt-cgactgagatgaatatcgaagttctttact |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || | || | ||| ||||||||||||||||||| |
|
|
| T |
25788507 |
tctgcagcctctgaatcatgtcaagccgcattgtgccattgttcaagccgcatcctgtcaaattattgtgcaacagcgataaatatcgaagttctttact |
25788408 |
T |
|
| Q |
399 |
cattctgaaagagggaagtgtaccaataaagttattgaatgataagtctaaatgaacaattacagtatattgtcaaatcctttatatttttaaggcaaac |
498 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || | |
|
|
| T |
25788407 |
cattctgaaagagggaagtgtagcaataaagttattgaatgataagtctaaatgaacaattacagtatactgtcaaatcctttatattt--aaggtaatc |
25788310 |
T |
|
| Q |
499 |
aaacgaccacaagtgtaaaaccaataaactaaagtttggattcactttatgttgtaaagtaaaattttaagaaacgcggttatcgtctatgttttgtag- |
597 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25788309 |
aaacgaccacaagtgtaaaaccaataaacaaaagtttggattcactttatgttgtaaagtaaaattttaagaaacgctgttatcgtctatgttttgtagg |
25788210 |
T |
|
| Q |
598 |
aatagcatagccaggtaatgttattttatgatgatagttttaaacttcagtgaaccaaaagacatcttgaccccnnnnnnntaaaataattaaccaacag |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25788209 |
aatagcatagccaggtaatgttattttatgatgatagttttcaaattcagtgaaccaaaagacatcttgaccccaaaaaaataaaataattaaccaacag |
25788110 |
T |
|
| Q |
698 |
atattgatagcttccacggctgtttgttctcgttgttattacttattcagttctatcttttacttgttttctcactaagtactaaattgagttaatacat |
797 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25788109 |
atattgatagcttccacggctgttt--------tgttattacttattcagttctatcttttacttgttttctcactaagtactaaattgagttaatgcat |
25788018 |
T |
|
| Q |
798 |
gatgaaagaataccaaatatgtaacttgaagcaaaatgggagagcataaaattgcaacctgaagctacattgagcacaagaaatgccatccnnnnnnnnt |
897 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25788017 |
gatgaaagaataccaaatatgtaacttgaagcaaaatgggagagcataaaattgcaacctgaagctacattgagcacaagaaatgccatccaaacaaaat |
25787918 |
T |
|
| Q |
898 |
taaactcacatcaagcctagttcataattgtgatgtactaataatagaattgtcatgtcatattagccgcaaaaaggtcgcaaacaatctaaatggctaa |
997 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25787917 |
taaactcacatcaagcctagttcataattgtgatgtattaaaaataaaattgtcatgtcatattagccgcaaaaaggtcgcaaacaatctaaatggctaa |
25787818 |
T |
|
| Q |
998 |
attgtccagcaatataatgcaatcaaatttaagcagctgcagcctgttgagaagcagccatccgcttcctagcctcctcaatgacggtcaatttgatacc |
1097 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25787817 |
attgtccagcaatataatgcaatcaaatttaagcagctgcagcctgttgagaagcagccatccgcttcctagcctcctcaatgacggtcaatttgatacc |
25787718 |
T |
|
| Q |
1098 |
tctgcctttgggaagagacacccaaggtttcggccctctgccaatggtgaagacattacccaatcgggttgcaaactcatgaccagcagcatcctggaca |
1197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25787717 |
tctgcctttgggaagagacacccaaggtttcggccctctgccaatggtgaagacattacccaatcgggttgcaaactcatgaccagcagcatcctggaca |
25787618 |
T |
|
| Q |
1198 |
tgaatggtctcaaaagtgcccatgtgtttctctctgttcttgatgaaaccaacacgacctctgttccttcctccagtcaccataacaatattccccacat |
1297 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25787617 |
tgaatcgtctcaaaagtgcccatgtgtttctttctgttcttgatgaaaccaacacgacctctgttccttcctccagtcaccataacaacattccccacat |
25787518 |
T |
|
| Q |
1298 |
caaatttgatga |
1309 |
Q |
| |
|
|||||||||||| |
|
|
| T |
25787517 |
caaatttgatga |
25787506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 1066 - 1307
Target Start/End: Original strand, 4139469 - 4139710
Alignment:
| Q |
1066 |
ctagcctcctcaatgacggtcaatttgatacctctgcctttgggaagagacacccaaggtttcggccctctgccaatggtgaagacattacccaatcggg |
1165 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||| | ||||| |||||||||||||||||||| | ||| ||||||| || || ||||| |||| || | |
|
|
| T |
4139469 |
ctagcctcttcaataacagtcaacttgatacctttacctttaggaagagacacccaaggttttgttcctttgccaatagtaaacacattgcccagccgag |
4139568 |
T |
|
| Q |
1166 |
ttgcaaactcatgaccagcagcatcctggacatgaatggtctcaaaagtgcccatgtgtttctctctgttcttgatgaaaccaacacgacctctgttcct |
1265 |
Q |
| |
|
| ||||||||||||||| |||||||| || ||||| ||||||||||| || | |||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
4139569 |
tggcaaactcatgaccacttgcatcctgaacgtgaatagtctcaaaagttcctttatgtttctctctgttcttgatgacaccaacacgacctctattcct |
4139668 |
T |
|
| Q |
1266 |
tcctccagtcaccataacaatattccccacatcaaatttgat |
1307 |
Q |
| |
|
|||||| || ||||| |||| ||||||||||||||| ||||| |
|
|
| T |
4139669 |
tcctccggtaaccatgacaacattccccacatcaaacttgat |
4139710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1062 - 1309
Target Start/End: Original strand, 7109133 - 7109380
Alignment:
| Q |
1062 |
cttcctagcctcctcaatgacggtcaatttgatacctctgcctttgggaagagacacccaaggtttcggccctctgccaatggtgaagacattacccaat |
1161 |
Q |
| |
|
||||||||| ||||||||||| || ||||| ||||| | || ||||||||||| ||||| || || | ||| ||||||| ||||| ||||| ||| |
|
|
| T |
7109133 |
cttcctagcttcctcaatgacagttaatttaatacccttacccttgggaagagatacccatggctttgtccccttgccaatagtgaacacattgaccaga |
7109232 |
T |
|
| Q |
1162 |
cgggttgcaaactcatgaccagcagcatcctggacatgaatggtctcaaaagtgcccatgtgtttctctctgttcttgatgaaaccaacacgacctctgt |
1261 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| || || || |||||||| || ||| | || || |||||||||||||| | |||||||| || || | |
|
|
| T |
7109233 |
cgagttgcaaactcatgaccagtggcatcctgaacgtggattgtctcaaaggttcccttatgcttttctctgttcttgatcactccaacacgccccctat |
7109332 |
T |
|
| Q |
1262 |
tccttcctccagtcaccataacaatattccccacatcaaatttgatga |
1309 |
Q |
| |
|
|| | || ||||| ||||| || | |||||| ||||| |||||||||| |
|
|
| T |
7109333 |
tcttaccaccagtaaccatcactacattcccaacatcgaatttgatga |
7109380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1136 - 1309
Target Start/End: Original strand, 19326687 - 19326860
Alignment:
| Q |
1136 |
tgccaatggtgaagacattacccaatcgggttgcaaactcatgaccagcagcatcctggacatgaatggtctcaaaagtgcccatgtgtttctctctgtt |
1235 |
Q |
| |
|
||||||| || || ||||| |||| || ||||| ||||||||||||| |||||||| || || || ||||| || || ||| | || ||||||||||| |
|
|
| T |
19326687 |
tgccaatagtaaacacattgaccaaacgagttgcgaactcatgaccagtggcatcctgaacgtggattgtctcgaatgttcccttatgcttctctctgtt |
19326786 |
T |
|
| Q |
1236 |
cttgatgaaaccaacacgacctctgttccttcctccagtcaccataacaatattccccacatcaaatttgatga |
1309 |
Q |
| |
|
||| || | |||||||| || || ||| | || ||||| |||||||| | ||||| |||||||||||||||| |
|
|
| T |
19326787 |
cttaatcactccaacacgtcccctattcttaccaccagtaaccataacgacgttcccaacatcaaatttgatga |
19326860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University