View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9435_2 (Length: 459)
Name: NF9435_2
Description: NF9435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9435_2 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 437
Target Start/End: Original strand, 12309225 - 12309652
Alignment:
| Q |
4 |
ttttcaatgcttgatattgattttaaccatacctattttttaacagatagatgaaaatgtacgaagggaaattataaatcatagatcactgaggcatccc |
103 |
Q |
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| T |
12309225 |
ttttcaatgtttgatattgattt-aaccatacctattttttaacagatagatgaaaatgtacaaagggaaattataaatcatagatcactgaggcatccc |
12309323 |
T |
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| Q |
104 |
aatattgtcaggttcaaagaggttcgtactctatagacgtccagtgtcttctaagctctaagctccaagcttatagatctatctatacta--atccgtac |
201 |
Q |
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| T |
12309324 |
aatattgtcaggttcaaggaggttcgtactctgttgacgtccggtgtcttctaagctctaagct-------tatagttctatctatattataatccgtac |
12309416 |
T |
|
| Q |
202 |
tcatactcgtcaaatataggtcatacttacccccacacatttagctattgtgatggaatatgcttctggaggagagctatttgagcgaatatgcaatgca |
301 |
Q |
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| T |
12309417 |
tcatactcgtcaaatataggtaatacttacccctacacatttagctattgtgatggaatatgcttccggaggagagctatttgagcgaatatgcaatgca |
12309516 |
T |
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| Q |
302 |
ggacggttcagcgaggatgaggttcttctcactcgacatacatggattttgaatgcagtactgctgctgcggttaacgttagtgaccgttatttgtgctg |
401 |
Q |
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| T |
12309517 |
ggacggttcagcgaggatgaggttctaatcatattcaattcatggattttgaatgcagtaccgctgctgcggttaacgttagtgaccgttatttgtgctg |
12309616 |
T |
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| Q |
402 |
caggcacggtttttcttccaacaacttatatcaggg |
437 |
Q |
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| T |
12309617 |
caggcacggtttttcttccaacaacttatatcaggg |
12309652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 34077494 - 34077584
Alignment:
| Q |
37 |
tattttttaacagatagatgaaaatgtacgaagggaaattataaatcatagatcactgaggcatcccaatattgtcaggttcaaagaggtt |
127 |
Q |
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| T |
34077494 |
tatttctttacagattgatgaaaatgtacagagagaaattataaaccatagatcattgaggcatcccaatattgtcaggttcaaggaggtt |
34077584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 254 - 326
Target Start/End: Original strand, 34077716 - 34077788
Alignment:
| Q |
254 |
atggaatatgcttctggaggagagctatttgagcgaatatgcaatgcaggacggttcagcgaggatgaggttc |
326 |
Q |
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| T |
34077716 |
atggaatatgcttccgggggagagctatttgagcgaatatgcaatgcggggcgattcagtgaggatgaggttc |
34077788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 44633090 - 44633001
Alignment:
| Q |
236 |
acacatttagctattgtgatggaatatgcttctggaggagagctatttgagcgaatatgcaatgcaggacggttcagcgaggatgaggtt |
325 |
Q |
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| T |
44633090 |
acacatttagcaattgtgatggagtatgcagctggaggagaactctttgagaggatatgcaatgctggcaggttcagtgaagatgaggtt |
44633001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 27107794 - 27107714
Alignment:
| Q |
47 |
cagatagatgaaaatgtacgaagggaaattataaatcatagatcactgaggcatcccaatattgtcaggttcaaagaggtt |
127 |
Q |
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| T |
27107794 |
cagattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgttaggttcaaagaggtt |
27107714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 37601884 - 37601943
Alignment:
| Q |
67 |
aagggaaattataaatcatagatcactgaggcatcccaatattgtcaggttcaaagaggt |
126 |
Q |
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| T |
37601884 |
aagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggt |
37601943 |
T |
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