View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9435_4 (Length: 430)
Name: NF9435_4
Description: NF9435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9435_4 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 4284553 - 4284361
Alignment:
| Q |
54 |
gttcactggttttacagttgaaacttggaatgcttcattccttcgagaatttgcagttccaaacctaaannnnnnnctcagtaacaatcaaatcaaattc |
153 |
Q |
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| T |
4284553 |
gttcactggttttgcagttgaaacttggaatgcttcattccttcgagaatttgcagttcaaaacctaaatttttt-ctcagtaataatcaaatcaaattc |
4284455 |
T |
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| Q |
154 |
gaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatggcgg |
247 |
Q |
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| T |
4284454 |
gaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatggcgg |
4284361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 360 - 403
Target Start/End: Complemental strand, 4284248 - 4284205
Alignment:
| Q |
360 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaact |
403 |
Q |
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| T |
4284248 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaact |
4284205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 401
Target Start/End: Complemental strand, 8682321 - 8682280
Alignment:
| Q |
360 |
aaatccaaaatcaatttccatctcaaaaccctaaacccccaa |
401 |
Q |
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| T |
8682321 |
aaatccaaaatcaatttccatctcaaaaccctaaaccaccaa |
8682280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 399
Target Start/End: Original strand, 6348737 - 6348776
Alignment:
| Q |
360 |
aaatccaaaatcaatttccatctcaaaaccctaaaccccc |
399 |
Q |
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| T |
6348737 |
aaatacaaaatcaatttgcatctcaaaaccctaaaccccc |
6348776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 23429478 - 23429422
Alignment:
| Q |
187 |
caatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatg |
243 |
Q |
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|||||||||||||||||||| | |||||||||| | ||||||||||||||||||| |
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| T |
23429478 |
caatggttcttcaattccacacaaacataatcacttaacttctagaagacaccaatg |
23429422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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