View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9435_8 (Length: 314)
Name: NF9435_8
Description: NF9435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9435_8 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 107601 - 107332
Alignment:
| Q |
16 |
atgaagatgttatggactaataaattgacaaatttttatgtactttatgattaaattgtgtgattttgtaagtttagggagatacgtttaatttggcaca |
115 |
Q |
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| T |
107601 |
atgaagatgttatggactaa---attgacaaatttttatgtactttatgattaaattgtgtgattttgtaagtttagggagatacgtttaatttggcaca |
107505 |
T |
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| Q |
116 |
gaaatcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaaca |
215 |
Q |
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| T |
107504 |
gaaatcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaaca |
107405 |
T |
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| Q |
216 |
cgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaact |
288 |
Q |
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| T |
107404 |
cgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaact |
107332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 97 - 286
Target Start/End: Complemental strand, 88159 - 87970
Alignment:
| Q |
97 |
atacgtttaatttggcacagaaatcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagc |
196 |
Q |
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| T |
88159 |
atacatttgatttagcacagaaatcagcatctgtaaaccaagtctcatcaacaacaacatcaggagttcgaggcttcccattataagcaacagcagcaat |
88060 |
T |
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| Q |
197 |
agaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaa |
286 |
Q |
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| T |
88059 |
agaagaagttaaaacaacacgtttgagtgatggggatttagcacatgagttgagaacattgagagtccctttgagagcaggatcaatcaa |
87970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 265
Target Start/End: Complemental strand, 2707190 - 2707050
Alignment:
| Q |
125 |
atcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagcagaagaggttaagacaacacgtttgagt |
224 |
Q |
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| T |
2707190 |
atcagtaaaccaagtttcatcgacaactacatcgagagtttgaggctttttattgtacgcaaccgcagcgatagaagaggttaatacaacacgtttcaga |
2707091 |
T |
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| Q |
225 |
aatggcgatttggcacatgatttgagaacattgagagtccc |
265 |
Q |
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| T |
2707090 |
gatggaaattttgcacatgatttcagcacatttagagtccc |
2707050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 97 - 287
Target Start/End: Original strand, 44784703 - 44784893
Alignment:
| Q |
97 |
atacgtttaatttggcacagaaatcagcatcagtaaaccaagtttcatcaacaacaacatcaggagttcgaggcttttcattgtacgcaacagcagcagc |
196 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | |
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| T |
44784703 |
atacgtttgatttagcacagaaatcagcatcagtaaaccaagtctcatcaacaacaacatcaggagttcgaggctttccattgtatgcaacagcagcgac |
44784802 |
T |
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| Q |
197 |
agaagaggttaagacaacacgtttgagtaatggcgatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaac |
287 |
Q |
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| T |
44784803 |
agaagatgttaagacaacacgtttgagtgatggggattttgcacatgagttgagaacattgagagtccctttgagcgcaggatcaatcaac |
44784893 |
T |
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