View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9435_low_1 (Length: 528)
Name: NF9435_low_1
Description: NF9435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9435_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 173 - 488
Target Start/End: Original strand, 4284361 - 4284670
Alignment:
| Q |
173 |
ccgccattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattgatgaataataatggatgcaaattgaagaagttcgaattt |
272 |
Q |
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| T |
4284361 |
ccgccattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattgatgaataataatggatgcaaattgaagaagttcgaattt |
4284460 |
T |
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| Q |
273 |
gatttgattgttactgagnnnnnnntttaggtttggaactgcaaattctcgaaggaatgaagcattccaagtttcaactgtaaaaccagtgaaccgcgaa |
372 |
Q |
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| T |
4284461 |
gatttgattattactgagaaaaaa-tttaggttttgaactgcaaattctcgaaggaatgaagcattccaagtttcaactgcaaaaccagtgaaccgcgaa |
4284559 |
T |
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| Q |
373 |
aatgtgaactgcgaaactgtgcccgcgaaattgtaaagaaacttgttattgggagtagtgctattagtacactctttgttttgnnnnnnngctaatacac |
472 |
Q |
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| T |
4284560 |
aatgtgaactgcgaaactgtgcccgcgaaattgtgaagaaacttgttatttggagtagtgctattagtacactctttttttt-----tttgctaatacac |
4284654 |
T |
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| Q |
473 |
cttcttattgttgaaa |
488 |
Q |
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| T |
4284655 |
cttcttattgttgaaa |
4284670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 4284205 - 4284248
Alignment:
| Q |
17 |
agttgggggtttagggttttgagatggaaattgattttggattt |
60 |
Q |
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| T |
4284205 |
agttgggggtttagggttttgagatggaaattgattttggattt |
4284248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 8682280 - 8682321
Alignment:
| Q |
19 |
ttgggggtttagggttttgagatggaaattgattttggattt |
60 |
Q |
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| T |
8682280 |
ttggtggtttagggttttgagatggaaattgattttggattt |
8682321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 6348776 - 6348737
Alignment:
| Q |
21 |
gggggtttagggttttgagatggaaattgattttggattt |
60 |
Q |
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| T |
6348776 |
gggggtttagggttttgagatgcaaattgattttgtattt |
6348737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 23429422 - 23429478
Alignment:
| Q |
177 |
cattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattg |
233 |
Q |
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| T |
23429422 |
cattggtgtcttctagaagttaagtgattatgtttgtgtggaattgaagaaccattg |
23429478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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