View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9435_low_3 (Length: 229)

Name: NF9435_low_3
Description: NF9435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9435_low_3
NF9435_low_3
[»] chr8 (13 HSPs)
chr8 (1-211)||(27777257-27777468)
chr8 (6-177)||(28345344-28345515)
chr8 (6-182)||(8545413-8545589)
chr8 (1-177)||(36274896-36275071)
chr8 (40-146)||(5700240-5700346)
chr8 (1-151)||(29918486-29918636)
chr8 (43-166)||(6388606-6388729)
chr8 (6-105)||(9476077-9476176)
chr8 (43-105)||(17108301-17108363)
chr8 (43-105)||(30903971-30904033)
chr8 (17-105)||(5793510-5793598)
chr8 (43-183)||(17084210-17084350)
chr8 (17-71)||(14155491-14155545)
[»] chr4 (28 HSPs)
chr4 (14-186)||(33616188-33616360)
chr4 (9-166)||(8843872-8844029)
chr4 (9-166)||(8856836-8856993)
chr4 (43-184)||(12075733-12075874)
chr4 (1-186)||(42907737-42907921)
chr4 (6-177)||(21956879-21957049)
chr4 (43-186)||(25265249-25265391)
chr4 (43-151)||(39086041-39086148)
chr4 (43-189)||(17113105-17113250)
chr4 (1-166)||(33516132-33516298)
chr4 (1-182)||(9280949-9281130)
chr4 (6-103)||(25298898-25298994)
chr4 (1-189)||(9929227-9929415)
chr4 (13-105)||(36919054-36919146)
chr4 (43-146)||(36306675-36306778)
chr4 (6-105)||(37384204-37384302)
chr4 (44-186)||(35304620-35304761)
chr4 (36-97)||(3505207-3505268)
chr4 (1-185)||(25940991-25941173)
chr4 (43-162)||(21714077-21714196)
chr4 (10-97)||(40420654-40420741)
chr4 (43-177)||(30034533-30034667)
chr4 (1-78)||(16575070-16575147)
chr4 (43-186)||(7334287-7334428)
chr4 (1-97)||(12505590-12505686)
chr4 (53-108)||(53906791-53906846)
chr4 (4-34)||(4737965-4737995)
chr4 (43-105)||(43553372-43553439)
[»] chr5 (15 HSPs)
chr5 (17-184)||(40187732-40187899)
chr5 (43-186)||(29664815-29664958)
chr5 (6-189)||(7350472-7350655)
chr5 (3-105)||(12457442-12457544)
chr5 (43-165)||(35583982-35584103)
chr5 (43-137)||(16311395-16311488)
chr5 (1-183)||(17153016-17153198)
chr5 (11-142)||(27900471-27900600)
chr5 (40-97)||(457471-457528)
chr5 (41-165)||(38972787-38972911)
chr5 (9-74)||(32575006-32575071)
chr5 (1-105)||(6810083-6810187)
chr5 (43-166)||(18451987-18452110)
chr5 (43-138)||(8020507-8020602)
chr5 (43-182)||(24207538-24207674)
[»] chr6 (11 HSPs)
chr6 (13-181)||(1947862-1948030)
chr6 (43-186)||(9402433-9402576)
chr6 (64-186)||(34346136-34346258)
chr6 (51-186)||(2126730-2126865)
chr6 (1-78)||(13769024-13769101)
chr6 (1-92)||(256551-256643)
chr6 (43-146)||(8320896-8320999)
chr6 (123-177)||(20348918-20348972)
chr6 (6-108)||(32959783-32959884)
chr6 (60-97)||(372899-372936)
chr6 (43-99)||(34179109-34179166)
[»] chr1 (13 HSPs)
chr1 (1-165)||(39219124-39219288)
chr1 (7-184)||(42729009-42729186)
chr1 (1-165)||(36421632-36421796)
chr1 (43-183)||(8880296-8880436)
chr1 (43-186)||(13692489-13692633)
chr1 (6-97)||(48125747-48125838)
chr1 (37-144)||(45460137-45460246)
chr1 (43-146)||(41477053-41477156)
chr1 (6-143)||(25181091-25181229)
chr1 (44-121)||(23719513-23719590)
chr1 (12-99)||(33293590-33293677)
chr1 (127-184)||(25155012-25155069)
chr1 (43-71)||(13798198-13798226)
[»] chr3 (6 HSPs)
chr3 (12-186)||(27252412-27252585)
chr3 (44-143)||(30904917-30905016)
chr3 (43-108)||(3414634-3414699)
chr3 (44-105)||(27937664-27937725)
chr3 (43-168)||(37032199-37032322)
chr3 (17-71)||(42243346-42243400)
[»] chr2 (14 HSPs)
chr2 (11-186)||(34214726-34214900)
chr2 (1-177)||(35248444-35248616)
chr2 (5-105)||(13531875-13531975)
chr2 (43-146)||(25210262-25210365)
chr2 (40-186)||(29656833-29656980)
chr2 (1-105)||(30696850-30696954)
chr2 (40-186)||(35409252-35409396)
chr2 (43-165)||(13954611-13954733)
chr2 (43-165)||(14095818-14095940)
chr2 (47-177)||(31600873-31601003)
chr2 (1-95)||(4961510-4961601)
chr2 (8-71)||(11958975-11959038)
chr2 (43-105)||(17845493-17845555)
chr2 (43-97)||(40359278-40359332)
[»] chr7 (11 HSPs)
chr7 (43-177)||(11472813-11472947)
chr7 (43-165)||(3773939-3774061)
chr7 (11-143)||(23533672-23533806)
chr7 (43-143)||(19440112-19440212)
chr7 (43-143)||(23475365-23475465)
chr7 (1-166)||(3156952-3157117)
chr7 (43-177)||(31345384-31345518)
chr7 (50-186)||(43550524-43550659)
chr7 (43-97)||(29292640-29292694)
chr7 (9-186)||(37217853-37218030)
chr7 (43-141)||(6557827-6557925)
[»] scaffold0244 (1 HSPs)
scaffold0244 (43-166)||(4681-4804)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-97)||(14791-14887)
[»] scaffold1322 (1 HSPs)
scaffold1322 (43-146)||(995-1098)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27777257 - 27777468
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattacccctttta-tataaatagaaatctaaactctaaatcatttta 99  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  27777257 gtacccaccccgaacccatacccaaactcgctctacatatataaaatcaatttattacccctttttgtataaatagaaatctaaactctaaatcatttta 27777356  T
Q  100 ctcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcggcccctactctccatc 199  Q
    || | | || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777357 cttaaacagtctgagtttcagtatttcagatgacactcacttatcatagttcactcctttctccttcaaaatctcacaatctcggcccctactctccatc 27777456  T
Q  200 actatatccatt 211  Q
    ||||||||||||    
T  27777457 actatatccatt 27777468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 28345515 - 28345344
Alignment:
Q  6 caccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    ||||||||||||||||||||||| | |||  || || ||||| ||| |||||||||||||||||||||||||| | ||| |||||||||||| |||||||    
T  28345515 caccccgaacccatacccaaacttgtcctgaatgtagaaaataaatatattaccccttttatataaatagaaaccgaaattctaaatcatttcactcaca 28345416  T
Q  106 tagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcaca 177  Q
     || |  ||| |||||||||||||||||||||||||||||| |||| ||| | |||||||| | ||||||||    
T  28345415 cagtcatagtctcagtatttcagatgacactcacttatcatagttctctcttatctccttccatatctcaca 28345344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 8545413 - 8545589
Alignment:
Q  6 caccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    |||||||||||||||| |||||||| || | || || ||||||||||||  || ||||||||||||| ||||||| |||| ||||||||||| ||||| |    
T  8545413 caccccgaacccatactcaaactcgtcccaaatgtagaaaatcaatttacaactccttttatataaacagaaatccaaaccctaaatcatttcactcaaa 8545512  T
Q  106 tagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctc 182  Q
    ||| | |||| || || ||||| ||||||||||||||||||  ||| ||| |||||||||| | |||||||| ||||    
T  8545513 tagccagagtctcggtctttcaaatgacactcacttatcataattctctcttttctccttccatatctcacattctc 8545589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 36275071 - 36274896
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||||||||||||||||||||| ||||  | ||   || || |||||||||||| || |||||||||||||||||||| | || | ||||||||||| ||    
T  36275071 gtactcaccccgaacccatacctaaacatgtcccgaatgtaaaaaatcaatttactatcccttttatataaatagaaacccaacc-ctaaatcatttcac 36274973  T
Q  101 tcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcaca 177  Q
    ||||| || |  ||| || || |||||||||||||||||||||||| || | | | |||||||||| | ||||||||    
T  36274972 tcacacagtcaaagtctcggtctttcagatgacactcacttatcatagtcctcccttttctccttccatatctcaca 36274896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 5700346 - 5700240
Alignment:
Q  40 tataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcac 139  Q
    |||||||| ||||| ||||||||||||||||||| |||| | |||||||||||||||| |||| ||||| | |||| | ||| ||| |||||||| ||||    
T  5700346 tataaaattaattttttaccccttttatataaattgaaaccgaaactctaaatcatttcactcccatagtcagagtcttagtcttttagatgacagtcac 5700247  T
Q  140 ttatcat 146  Q
    |||||||    
T  5700246 ttatcat 5700240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 29918636 - 29918486
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||| ||||||||| |||||| ||||| || || | || || ||||||||||||||||| ||||||||||||||||||   |||| ||||||||||| ||    
T  29918636 gtacccaccccgaaaccatacacaaacccgtcccaaatgtaaaaaatcaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcac 29918537  T
Q  101 tcacatagactgagtttcagtatttcagatgacactcacttatcattgttc 151  Q
    ||||| ||   |||| ||| | |||||||||||||| | ||||||| ||||    
T  29918536 tcacacagttagagtctcaatctttcagatgacacttagttatcatagttc 29918486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 6388606 - 6388729
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||||||||| ||||||||||| ||||| | |||| ||||||||||| ||||||| |    |||| ||||  ||| | ||||||||||||||    
T  6388606 aaaatcaatttattacccattttatataaacagaaacccaaaccctaaatcatttcactcacacaattagagtctcagactttaaaatgacactcactta 6388705  T
Q  143 tcattgttcactcctttctccttc 166  Q
    |||| |||| || |||||||||||    
T  6388706 tcatagttctcttctttctccttc 6388729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 9476077 - 9476176
Alignment:
Q  6 caccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    |||| ||||||||||||||||| |  ||   || || ||||| || |||||||||||| |||||||||||||||  ||||||||||| |||| |||||||    
T  9476077 cacctcgaacccatacccaaacccatcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaca 9476176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 17108363 - 17108301
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    ||||||||||||||| || |||||||||||||||||  ||||| |||||| |||| |||||||    
T  17108363 aaaatcaatttattatccattttatataaatagaaacttaaaccctaaataatttcactcaca 17108301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 30904033 - 30903971
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    |||||||||||||||| | ||||||||||||||||| | ||||  |||||||||| |||||||    
T  30904033 aaaatcaatttattacacattttatataaatagaaaccaaaaccttaaatcatttcactcaca 30903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 5793598 - 5793510
Alignment:
Q  17 catacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    ||||| |||||||| |||| || || |||||||||| |||| |  |||||||||||||||||   |||| ||||||||||| |||||||    
T  5793598 catactcaaactcgtcctaaatgtaaaaaatcaattaattatcatttttatataaatagaaactcaaaccctaaatcatttcactcaca 5793510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 17084210 - 17084350
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    ||||||||||||||  || ||||||||||||| ||| | || | |||||| |||   |||||| |  | |||||||||| ||||| |||||| |||||||    
T  17084210 aaaatcaatttattgtcctttttatataaatataaacccaagccctaaattattcccctcacacaatcagagtttcagtctttcatatgacaatcactta 17084309  T
Q  143 tcattgttcactcctttctccttcaaaatctcacaatctcg 183  Q
    |||| |||  ||| |||||||||| | || ||||| |||||    
T  17084310 tcatagttatctcttttctccttccatatttcacactctcg 17084350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 14155545 - 14155491
Alignment:
Q  17 catacccaaactcgccctacatatataaaatcaatttattaccccttttatataa 71  Q
    ||||||||||| |  |||| || || |||||||||||||||||||||||||||||    
T  14155545 catacccaaacccatcctaaatgtagaaaatcaatttattaccccttttatataa 14155491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 33616188 - 33616360
Alignment:
Q  14 acccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactga 113  Q
    ||||||||| ||||  |||||  || || |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||| || | ||    
T  33616188 acccataccaaaacctgccctgaatgtagaaaatcaatttattaccccttttatataaataaaaatcaaaaccctaaatcatttcactcacacagtcaga 33616287  T
Q  114 gtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
    || | | ||||||| |||||||||||||||||| |||| ||| ||||||| || | |||||||| ||||||||    
T  33616288 gtcttaatatttcatatgacactcacttatcatagttctctcttttctccatccatatctcacactctcggcc 33616360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 8843872 - 8844029
Alignment:
Q  9 cccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatag 108  Q
    ||||||| ||||||||||| || | |  || || ||||| |||||||||||||||| |||||||||||||  ||||  ||||||||||| ||||||| ||    
T  8843872 cccgaactcatacccaaacccgtcgtgaatgtagaaaattaatttattacccctttcatataaatagaaacttaaatcctaaatcatttcactcacacag 8843971  T
Q  109 actgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttc 166  Q
     |  ||| | ||  |||||||||||||||||||||||| |||| ||| ||||||||||    
T  8843972 tcacagtcttagactttcagatgacactcacttatcatagttctctcttttctccttc 8844029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 8856836 - 8856993
Alignment:
Q  9 cccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatag 108  Q
    ||||||| ||||||||||| || | |  || || ||||| |||||||||||||||| |||||||||||||  ||||  ||||||||||| ||||||| ||    
T  8856836 cccgaactcatacccaaacccgtcgtgaatgtagaaaattaatttattacccctttcatataaatagaaacttaaatcctaaatcatttcactcacacag 8856935  T
Q  109 actgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttc 166  Q
     |  ||| | ||  |||||||||||||||||||||||| |||| ||| ||||||||||    
T  8856936 tcacagtcttagactttcagatgacactcacttatcatagttctctcttttctccttc 8856993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 12075733 - 12075874
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||||||||| |||||||||||||||||   ||||||| |||||||| || |||| ||   |||||||||| ||| ||||||||  ||||||    
T  12075733 aaaatcaatttattacccattttatataaatagaaactaaaactctgaatcatttcacccacacagttagagtttcagttttttagatgacatccactta 12075832  T
Q  143 tcattgttcactcctttctccttcaaaatctcacaatctcgg 184  Q
    | || |||| ||| |||||||||| | |||||||| ||||||    
T  12075833 ttatagttctctcttttctccttctatatctcacactctcgg 12075874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 42907921 - 42907737
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||| |||||||| |||||||||||||||| ||   || || |||||||||||| ||| | |||||||||||||||||   |||| ||||||||||| ||    
T  42907921 gtacccaccccgagcccatacccaaactcgtcccgaatgtagaaaatcaatttactactc-ttttatataaatagaaactcaaaccctaaatcatttcac 42907823  T
Q  101 tcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
    ||| | ||   |||| | ||| ||||||||||||| |||||||||| ||||  || |||||||||| | |||||||| ||| ||||    
T  42907822 tcatacagttagagtcttagtctttcagatgacacacacttatcatagttctatcttttctccttccatatctcacactcttggcc 42907737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 21956879 - 21957049
Alignment:
Q  6 caccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    |||||||||||||||||||||||||      || || |||||||||||||||||| ||||||||||||| ||| | |||| ||||||||||| | || ||    
T  21956879 caccccgaacccatacccaaactcgttacgaatgtagaaaatcaatttattaccc-ttttatataaataaaaacccaaaccctaaatcatttcattcgca 21956977  T
Q  106 tagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcaca 177  Q
     || | |||| ||||| ||| |||||||||||| ||||||| |||   || |||||||||| | ||||||||    
T  21956978 cagtcagagtgtcagtcttttagatgacactcatttatcatagttatatcttttctccttccatatctcaca 21957049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 25265249 - 25265391
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    ||||||||||||||| || || ||||||||||||||   ||| |||||||||||||||||||| |  | |||| ||| | |||||||||||| || ||||    
T  25265249 aaaatcaatttattatcc-ttctatataaatagaaactcaaattctaaatcattttactcacacaatcagagtctcaatttttcagatgacagtcgctta 25265347  T
Q  143 tcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
    |||| |||| ||| |||||||||| | |||||||| | ||||||    
T  25265348 tcatagttctctcttttctccttccatatctcacactttcggcc 25265391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 39086148 - 39086041
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||| ||||  |||||||||||||||||  ||||| ||||||||||| ||||||| || | || | ||||| |||||||||||||| |||||    
T  39086148 aaaatcaatttactacct-ttttatataaatagaaacttaaaccctaaatcatttcactcacacagtcagactctcagtttttcagatgacacttactta 39086050  T
Q  143 tcattgttc 151  Q
    |||| ||||    
T  39086049 tcatagttc 39086041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 17113105 - 17113250
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||||||| | ||| ||||||||| ||| | |||   |||||||||| |||| || || | |||| ||||| ||||||||||||||||||||    
T  17113105 aaaatcaatttattactc-tttcatataaataaaaacccaaatcttaaatcatttcactcccaaagtcagagtctcagtctttcagatgacactcactta 17113203  T
Q  143 tcattgttcactcctttctccttcaaaatctcacaatctcggcccct 189  Q
    |||| |||  ||| ||| |||||| | |||||||| |||| ||||||    
T  17113204 tcatagttatctcttttttccttccatatctcacactctcagcccct 17113250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 33516132 - 33516298
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||| ||||||||||| |||||||||| || |  | || || ||||||||| |||||||||||||||||||||| |||   |||| ||||||||||| ||    
T  33516132 gtacccaccccgaacctatacccaaacccgtctcaaatgtaaaaaatcaatgtattaccccttttatataaataaaaactcaaaccctaaatcatttcac 33516231  T
Q  101 tcaca-tagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttc 166  Q
    |||||   |   |||| |  || ||||||||||||||||||||||||  ||| ||| ||||||||||    
T  33516232 tcacacccgttagagtcttggtctttcagatgacactcacttatcataattctctcttttctccttc 33516298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 9280949 - 9281130
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||| |||||||||| ||||| |||||| | |||  ||||| ||||| ||||||||| |||||||||||| ||||||||  |||| ||||||||||  |     
T  9280949 gtacccaccccgaactcatactcaaacttgtcctgaatatagaaaataaatttattatcccttttatatagatagaaattcaaaccctaaatcattacat 9281048  T
Q  101 tcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctc 182  Q
    | ||| |    |||| ||| | |||||||| ||| ||||||||||| || | ||| |||||||||| | |||||||| ||||    
T  9281049 tgacaaaattagagtctcaatctttcagataacattcacttatcatagtactctcttttctccttccatatctcacactctc 9281130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 25298898 - 25298994
Alignment:
Q  6 caccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactca 103  Q
    |||||||||||||||||||||| ||  | | || |  ||||||||||||| ||||||||| ||||||||||| || |||||||||||||||| |||||    
T  25298898 caccccgaacccatacccaaacccgtaccaaatgttgaaaatcaatttatcaccccttttttataaatagaactc-aaactctaaatcatttcactca 25298994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 9929227 - 9929415
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||| |||||||||| | |||||||| ||| |||  |  || ||||||||||||||||| |||  ||||||||| |||   ||||||||||| |||| ||    
T  9929227 gtacccaccccgaactcttacccaaaatcgtcctgaaagtagaaaatcaatttattacctcttccatataaatataaactgaaactctaaataatttcac 9929326  T
Q  101 tcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcggcccct 189  Q
    ||||| || | |||| || || ||| |||| ||| ||||||||||| |||| ||| | |||| |||||  ||||||| | |||||||||    
T  9929327 tcacacagtcagagtctcggtcttttagataacaatcacttatcatagttctctcttatctcattcaatctctcacactatcggcccct 9929415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 36919146 - 36919054
Alignment:
Q  13 aacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    ||||||||||||||||||  |   || || ||||||| ||||||||| ||||||||||||||||||   |||||||||||||||| |||||||    
T  36919146 aacccatacccaaactcgttccggatgtagaaaatcagtttattaccacttttatataaatagaaactcaaactctaaatcatttcactcaca 36919054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 36306778 - 36306675
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||||||||||||||||||||||||||||| |||   |||||||||| ||| ||| |    |||| ||||| ||| |||||||||||  |||    
T  36306778 aaaatcaatttattaccccttttatataaatagaaatcgaaatcataaatcatttcacttacacaattagagtctcagtctttgagatgacactcggtta 36306679  T
Q  143 tcat 146  Q
    ||||    
T  36306678 tcat 36306675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 37384302 - 37384204
Alignment:
Q  6 caccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    |||||| ||||||||| ||||| || || | ||||| ||| ||||||||||| ||||||||||||||||||| |  |||| ||||||||||| |||||||    
T  37384302 caccccaaacccatacacaaacccgtcccaaatatagaaa-tcaatttattatcccttttatataaatagaagttcaaaccctaaatcatttcactcaca 37384204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 35304620 - 35304761
Alignment:
Q  44 aaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcacttat 143  Q
    ||||||||||||||||| ||||||||||| |||||   |||||||||||||||| || |||| || | |||| ||||| |||||| |||   ||||||||    
T  35304620 aaatcaatttattaccc-ttttatataaaaagaaactcaaactctaaatcatttcacccacagagccggagtctcagtctttcaggtgatgatcacttat 35304718  T
Q  144 cattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
    |   |||| ||  |||||||||| | |||||||| ||||||||    
T  35304719 cgcagttctcttttttctccttccatatctcacactctcggcc 35304761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 3505268 - 3505207
Alignment:
Q  36 catatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattt 97  Q
    |||||| |||||||||||||||| |||||||| |||||||||||  |||||||| |||||||    
T  3505268 catatagaaaatcaatttattactccttttatctaaatagaaattcaaactctagatcattt 3505207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 25941173 - 25940991
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||| ||||||||||||||||||||||  | |    || || ||||||||||||| |||||||||||||||||||||| | ||   |||||||| || ||    
T  25941173 gtacccaccccgaacccatacccaaacatgtctcggatgtagaaaatcaatttataaccccttttatataaatagaaacccaaggcctaaatcaattcac 25941074  T
Q  101 tcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcggc 185  Q
    |||||    |  ||| | ||| |||||||||||| ||||||||||| |||  ||  |||||||||| |||||| ||| |||||||    
T  25941073 tcacacgatcatagtcttagtctttcagatgacattcacttatcatagtt--ctattttctccttccaaatcttacactctcggc 25940991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 21714077 - 21714196
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    ||||| ||||||||||| ||||||||||||||||||   |||| ||||||||||| ||| ||| |    |||| ||||| | ||| |||||||||||||     
T  21714077 aaaattaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcacttacacaattagagtctcagtctctcaaatgacactcacttc 21714176  T
Q  143 tcattgttcactcctttctc 162  Q
    |||| |||| ||| ||||||    
T  21714177 tcatagttctctcttttctc 21714196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 40420654 - 40420741
Alignment:
Q  10 ccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattt 97  Q
    ||||||| |||||||||| | |||   || || ||||||| |||||||||||||||||||||||||||| | |||| | |||||||||    
T  40420654 ccgaacctatacccaaacccaccccgaatgtagaaaatcactttattaccccttttatataaatagaaaccaaaaccccaaatcattt 40420741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 30034667 - 30034533
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||| |||| | |||||||||||||||| | |||| ||||||||||| ||||| | ||   ||||  || | |||||  |||||||| ||||    
T  30034667 aaaatcaatttactacctcatttatataaatagaaacccaaaccctaaatcatttcactcataaagtgagagtcacaatctttcaagtgacactcgctta 30034568  T
Q  143 tcattgttcactcctttctccttcaaaatctcaca 177  Q
    |||| |||  ||| |||||||||| | ||||||||    
T  30034567 tcatagttttctcttttctccttccatatctcaca 30034533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 16575147 - 16575070
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaa 78  Q
    |||| ||| ||||||| ||||||||||||| | || || || ||||| |||||||||||| ||| |||||||||||||    
T  16575147 gtacccactccgaacctatacccaaactcgtcttaaatgtaaaaaattaatttattacccttttaatataaatagaaa 16575070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 7334287 - 7334428
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    ||||||||||||||| |  |||||||  ||||||||   |||||||||||||||| ||||||| ||    ||| ||||| ||| || ||||| | | |||    
T  7334287 aaaatcaatttattatcgtttttata--aatagaaactcaaactctaaatcatttcactcacacagttaaagtctcagtcttttagttgacatttattta 7334384  T
Q  143 tcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
    ||||  ||| ||| |||||||||| | |||||||||||||||||    
T  7334385 tcataattctctcttttctccttccatatctcacaatctcggcc 7334428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12505590 - 12505686
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattt 97  Q
    |||| ||||| |||| ||||||||||| || |||  |  || || ||||||||||| |||||||||||||||||||||  |||||  ||||||||||    
T  12505590 gtacccaccctgaactcatacccaaacccgtcctgaaggtaaaacatcaatttatttccccttttatataaatagaaacttaaacattaaatcattt 12505686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 53906791 - 53906846
Alignment:
Q  53 tattaccccttttatataaatagaaatctaaactctaaatcattttactcacatag 108  Q
    |||||||||||||||||||||||||||| ||||  ||| | |||| ||||||||||    
T  53906791 tattaccccttttatataaatagaaatcgaaaccttaagttatttcactcacatag 53906846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 4737965 - 4737995
Alignment:
Q  4 ctcaccccgaacccatacccaaactcgccct 34  Q
    |||||||||||||||||||||||||||||||    
T  4737965 ctcaccccgaacccatacccaaactcgccct 4737995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 43553439 - 43553372
Alignment:
Q  43 aaaatcaatttattaccccttttat----ataaatagaaa--tctaaactctaaatcattttactcaca 105  Q
    |||||||||||||||||||||||||    |||||||||||  ||||||| ||||||||||| |||||||    
T  43553439 aaaatcaatttattaccccttttatatagataaatagaaaactctaaac-ctaaatcatttcactcaca 43553372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 40187732 - 40187899
Alignment:
Q  17 catacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtt 116  Q
    |||||||||||||| ||   ||||| ||||| ||||||||||| ||||||||||||||| |||  |||  |||||||||||||||||||||| | |||||    
T  40187732 catacccaaactcgtcccgaatatagaaaattaatttattacctcttttatataaatagtaatgaaaatcctaaatcattttactcacatagtcagagtt 40187831  T
Q  117 tcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcgg 184  Q
    ||| | |||||||||||||||||||||||| |||| ||| | |||| ||| | |||||||| ||||||    
T  40187832 tcaatctttcagatgacactcacttatcatagttctctcttatctcattccatatctcacactctcgg 40187899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 29664958 - 29664815
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||| |||||||||||| ||||||||||   |||||||||||||||| | | |||| | | |||| ||||||||||||||||||||||||||    
T  29664958 aaaatcaatttactaccccttttatttaaatagaaactcaaactctaaatcatttcatttacattgtcagagtctcagtatttcagatgacactcactta 29664859  T
Q  143 tcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
    ||||  ||| ||| |||||| ||||| |||| ||| ||| ||||    
T  29664858 tcataattctctcttttctctttcaatatctaacactcttggcc 29664815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 7350472 - 7350655
Alignment:
Q  6 caccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    ||||||||||||||||  |||| || |  | || || ||||| ||||||||| | ||||||||||||||| |||| |||| |||||||||||||||||||    
T  7350472 caccccgaacccatacttaaacccgtctcaaatgtagaaaattaatttattatcgcttttatataaatagtaatcgaaaccctaaatcattttactcaca 7350571  T
Q  106 tagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcggcccct 189  Q
    |||   ||||  || | ||| ||| ||| |||||||||||| |||| ||| | |||||||| | |||||||| ||||| |||||    
T  7350572 tagttagagtcgcaatctttgagacgacgctcacttatcatagttctctcttatctccttccatatctcacattctcgacccct 7350655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 12457544 - 12457442
Alignment:
Q  3 actcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactc 102  Q
    |||||| |||||| ||||||||||| || ||   || || |||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| ||||    
T  12457544 actcactccgaactcatacccaaacccgtcccgaatgtagaaaatcaatttattacccctttaatataaatagaaacctaaagtctaaatcatttcactc 12457445  T
Q  103 aca 105  Q
    |||    
T  12457444 aca 12457442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 35584103 - 35583982
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||||||||| |||||||||||||||||   |||| |||||||||||| |||||| || | |||| ||||| ||||||||| |||||| |||    
T  35584103 aaaatcaatttattaccc-ttttatataaatagaaactcaaaccctaaatcattttgctcacacagtcagagtctcagtctttcagatgtcactcattta 35584005  T
Q  143 tcattgttcactcctttctcctt 165  Q
    ||| ||||| ||  |||||||||    
T  35584004 tcactgttctctgttttctcctt 35583982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 16311395 - 16311488
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactc 137  Q
    ||||||||||||||| |||||||||||||||||||| | |||| |||||||||||||||| || || || ||| ||||| |||||| ||||||||    
T  16311395 aaaatcaatttattatcccttttatataaatagaaa-ccaaaccctaaatcattttactcgcagagtctcagtctcagtctttcagttgacactc 16311488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 17153198 - 17153016
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    ||||||| ||| ||||||||||||||| || ||   || || ||||||||||||||||||||| || ||||||||||||| |||  |||||| |||| ||    
T  17153198 gtactcatcccaaacccatacccaaacccgtcccgaatgtagaaaatcaatttattaccccttctagataaatagaaatccaaaacctaaataatttcac 17153099  T
Q  101 tcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcg 183  Q
    ||||| || | ||   ||||| ||||| |||| | ||||||||||| |||| ||  ||||| |||| | |||||||| |||||    
T  17153098 tcacacagtcagatactcagtctttcaaatgagattcacttatcatagttctctattttcttcttccatatctcacactctcg 17153016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 27900471 - 27900600
Alignment:
Q  11 cgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagac 110  Q
    ||||||||||||||||  |||||   || ||||||||||||||||| || ||||||||||||||||||   |||| ||||||||||| | ||||  | |     
T  27900471 cgaacccatacccaaatccgccccgaatgtataaaatcaatttatttcctcttttatataaatagaaactgaaaccctaaatcatttcagtcac--acat 27900568  T
Q  111 tgagtttcagtatttcagatgacactcactta 142  Q
    | ||  ||||| ||||||||||||||||||||    
T  27900569 tcagaatcagtctttcagatgacactcactta 27900600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 457471 - 457528
Alignment:
Q  40 tataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattt 97  Q
    ||||||||||||||||||| ||||||||||||||||||| | |||  |||||||||||    
T  457471 tataaaatcaatttattacaccttttatataaatagaaaccaaaatcctaaatcattt 457528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 38972911 - 38972787
Alignment:
Q  41 ataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcact 140  Q
    ||||||||||||||||| ||||||||||||||| ||||   |||| ||||||||||| | |||||  |   |||| | | | ||||| ||||||||||||    
T  38972911 ataaaatcaatttattaacccttttatataaatcgaaactgaaaccctaaatcatttgattcacactgttagagtctaaatctttcatatgacactcact 38972812  T
Q  141 tatcattgttcactcctttctcctt 165  Q
    |||||| |||| ||| | |||||||    
T  38972811 tatcatagttctctcttatctcctt 38972787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 32575006 - 32575071
Alignment:
Q  9 cccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaata 74  Q
    |||||||||| |||||||| |||||   || || || |||||||||||||||||||||||||||||    
T  32575006 cccgaacccaaacccaaacccgccccgaatgtagaatatcaatttattaccccttttatataaata 32575071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 6810187 - 6810083
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    ||||||||||||||||||||||||||| |  ||   ||    |||||||||||||| |||||||||||| |||||||| | ||||  ||||| |||| ||    
T  6810187 gtactcaccccgaacccatacccaaacccatcccgaatggtgaaaatcaatttattgccccttttatatcaatagaaacccaaaccttaaatgatttcac 6810088  T
Q  101 tcaca 105  Q
    |||||    
T  6810087 tcaca 6810083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 18451987 - 18452110
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaat-ctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactt 141  Q
    ||||||||||||||| ||||||||||| ||||||||| | || || || ||||||| ||||||| ||    ||| || || |||||||||| | ||||||    
T  18451987 aaaatcaatttattatcccttttatattaatagaaatacgaatct-tagatcatttcactcacacagttaaagtctcggtctttcagatgatagtcactt 18452085  T
Q  142 atcattgttcactcctttctccttc 166  Q
    ||||| |||| ||| ||||||||||    
T  18452086 atcatggttctctcttttctccttc 18452110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 8020602 - 8020507
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactca 138  Q
    |||||||||||| |||||||||||||||||   ||| |||||| |||||| |||  ||||| | || | |||| ||||| ||||| ||||||||||    
T  8020602 aaaatcaatttactaccccttttatataaaggaaaacctaaaccctaaattattccactcaaacagtcagagtctcagtctttcaaatgacactca 8020507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 24207674 - 24207538
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagact-gagtttcagtatttcagatgacactcactt 141  Q
    ||||| |||||||||  ||||||||||||||| |||   |||| |||||| | || |||||||    || |||| ||||| |||||||||||||| ||||    
T  24207674 aaaattaatttattaatccttttatataaataaaaactaaaaccctaaataacttcactcaca----ctagagtctcagtctttcagatgacactaactt 24207579  T
Q  142 atcattgttcactcctttctccttcaaaatctcacaatctc 182  Q
    || || |||| ||| |||||||||||  |||||||| ||||    
T  24207578 ataatagttctctcttttctccttcattatctcacactctc 24207538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 1947862 - 1948030
Alignment:
Q  13 aacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactg 112  Q
    ||||||||| ||||||||  | | || || |||||||||||||||||||||||||||||||| ||||| |||| |||| ||||| |||||||| || | |    
T  1947862 aacccatactcaaactcgttccaaatgtagaaaatcaatttattaccccttttatataaataaaaatccaaaccctaagtcattatactcacacagtcag 1947961  T
Q  113 agtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatct 181  Q
    ||| || |  |||||||||||||||||||||||| |||| ||| ||||| |||  | ||||||||||||    
T  1947962 agtatctgactttcagatgacactcacttatcatagttccctcttttctactttcatatctcacaatct 1948030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 9402576 - 9402433
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||| |||||| |||||||||||||||| | |||| ||||||||||| ||||||| || | |||| |  || ||||| || |||||||||||    
T  9402576 aaaatcaatttagtaccccatttatataaatagaaacccaaaccctaaatcatttcactcacacagtcagagtctaggtctttcatatcacactcactta 9402477  T
Q  143 tcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
    |||| |||| ||| |||||||||| | |||||||| | ||||||    
T  9402476 tcatagttctctcttttctccttccatatctcacattttcggcc 9402433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 34346136 - 34346258
Alignment:
Q  64 ttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctcc 163  Q
    ||||||||||||||| | |||| ||||||||||| ||||||| || | |||| ||||| ||| |||||| | ||||||||||| ||||  || ||||| |    
T  34346136 ttatataaatagaaacccaaaccctaaatcatttcactcacacagtcagagtctcagtcttttagatgagagtcacttatcatagttctatcttttcttc 34346235  T
Q  164 ttcaaaatctcacaatctcggcc 186  Q
    ||| | |||||||| ||||||||    
T  34346236 ttccatatctcacattctcggcc 34346258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 2126730 - 2126865
Alignment:
Q  51 tttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcacttatcattgtt 150  Q
    |||||||||||||||||||| |||||||   || || |||||||||| ||| ||| ||    ||| || |||||| |||| ||||||| ||||||| |||    
T  2126730 tttattaccccttttatatagatagaaactcaagctttaaatcatttcacttacagagttaaagtctcggtattttagatcacactcagttatcatagtt 2126829  T
Q  151 cactcctttctccttcaaaatctcacaatctcggcc 186  Q
    | ||| |||||||||| | |||||||| ||| ||||    
T  2126830 ctctcttttctccttccatatctcacactcttggcc 2126865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 13769101 - 13769024
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaa 78  Q
    |||| ||||| ||||||||| |||||| || |||  || || |||||||||||||||| |||||||||||||| ||||    
T  13769101 gtacccacccagaacccatatccaaacccgtcctgaatgtagaaaatcaatttattactccttttatataaattgaaa 13769024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 256551 - 256643
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatat-aaatagaaatctaaactctaaat 92  Q
    |||| |||||| ||||||||||||||| |  |||| || || |||||||||||| |||||||||||| | |||||||||   |||||||||||    
T  256551 gtacccaccccaaacccatacccaaacccctcctaaatgtagaaaatcaatttactaccccttttatttaaaatagaaacacaaactctaaat 256643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 8320896 - 8320999
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||| ||||||| || ||||  ||||||||||  ||||| ||||||||||| ||| ||| || | |||| || || ||||||| |||| |||||||    
T  8320896 aaaatcaacttattactccatttacgtaaatagaaacttaaaccctaaatcatttcacttacacagtcagagtctcggtctttcagacgacattcactta 8320995  T
Q  143 tcat 146  Q
    ||||    
T  8320996 tcat 8320999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 20348972 - 20348918
Alignment:
Q  123 tttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcaca 177  Q
    |||||||||||||| ||||||||| |||| ||| |||||||||| | ||||||||    
T  20348972 tttcagatgacacttacttatcatagttctctcttttctccttccatatctcaca 20348918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 32959884 - 32959783
Alignment:
Q  6 caccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    ||||||||||||||||| || | || | || || || |||||||||||||||||||| ||||||||  || || | |||| |||||| |||||||| |||    
T  32959884 caccccgaacccataccaaatc-cgtcataaatgtagaaaatcaatttattacccctattatataagcagtaacccaaaccctaaattattttacttaca 32959786  T
Q  106 tag 108  Q
    |||    
T  32959785 tag 32959783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 372899 - 372936
Alignment:
Q  60 ccttttatataaatagaaatctaaactctaaatcattt 97  Q
    |||||||||||||||||||||||||  |||||||||||    
T  372899 ccttttatataaatagaaatctaaatcctaaatcattt 372936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 34179109 - 34179166
Alignment:
Q  43 aaaatcaatttattacccctttt-atataaatagaaatctaaactctaaatcatttta 99  Q
    ||||||||||||||||| ||||| |||||||||||||   |||| |||||||||||||    
T  34179109 aaaatcaatttattacctctttttatataaatagaaactcaaaccctaaatcatttta 34179166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 39219288 - 39219124
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||| |||||||||||||||||||||||||  ||| || || ||||| ||||||||||| ||||||||||||||||||   |||| |||||||||||  |    
T  39219288 gtacccaccccgaacccatacccaaactcgttctaaatgtagaaaattaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcgc 39219189  T
Q  101 tcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctcctt 165  Q
    ||||| || |  ||| ||| | ||||| |||||||||||||||||| |||  |||||||||||||    
T  39219188 tcacacagtcacagtctcattttttcatatgacactcacttatcatagttatctcctttctcctt 39219124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 42729009 - 42729186
Alignment:
Q  7 accccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacat 106  Q
    ||||||||| ||||||||||| ||  ||  || || ||||| ||||||| | ||||||||||||||||||||  || || ||||||||||| |||||||     
T  42729009 accccgaactcatacccaaacacgttctgaatgtagaaaataaatttatcatcccttttatataaatagaaacttatacactaaatcatttcactcacac 42729108  T
Q  107 agactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcgg 184  Q
    || | |||| ||||| |||||||| |||| |||||||||| |||| ||| | |||||||| | || ||||| ||||||    
T  42729109 agtcagagtctcagtctttcagataacacccacttatcatagttctctcttgtctccttccatatatcacactctcgg 42729186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 36421796 - 36421632
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||||||||||||||  ||||||||||||| |    ||||| ||||||||||||||| |||| ||||||||||| |||    ||||||||||||||| |     
T  36421796 gtactcaccccgaacttatacccaaactcgtctcgaatatagaaaatcaatttattatccctcttatataaataaaaactcgaactctaaatcatttcat 36421697  T
Q  101 tcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctcctt 165  Q
    ||||| || | |||| ||| | ||||||||| || ||||||||||| |||| ||| |||||||||    
T  36421696 tcacacagtcagagtctcaatctttcagatggcaatcacttatcatagttctctcttttctcctt 36421632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 8880436 - 8880296
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    ||||| ||||||||||||||||| ||||||||||||   ||||| |||||||||| ||||||| ||   ||||  |||| |||||| ||||||| | |||    
T  8880436 aaaataaatttattaccccttttttataaatagaaactcaaactttaaatcatttcactcacaaagttagagtcgcagtctttcagttgacacttattta 8880337  T
Q  143 tcattgttcactcctttctccttcaaaatctcacaatctcg 183  Q
    ||||  ||| ||| |||||||||| | ||||||||||||||    
T  8880336 tcataattctctcttttctccttccatatctcacaatctcg 8880296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 13692633 - 13692489
Alignment:
Q  43 aaaatcaattt-attaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactt 141  Q
    ||||||||||| |||| |||||||||||||||||||| | |||| ||||||||||| || |||| |    |||| | | | ||||||| |||||||||||    
T  13692633 aaaatcaattttattatcccttttatataaatagaaaccaaaaccctaaatcatttcacccacacaattagagtcttactctttcagacgacactcactt 13692534  T
Q  142 atcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
    || || |||| ||| |||||||||| | |||||||| ||||||||    
T  13692533 attatagttctctcttttctccttccatatctcacactctcggcc 13692489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 48125747 - 48125838
Alignment:
Q  6 caccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattt 97  Q
    ||||||||||||||||||||||||| |    || || |||||||||||| |||| ||||||||||||||||||   ||||||||||| ||||    
T  48125747 caccccgaacccatacccaaactcgtcgcgaatgtagaaaatcaatttactaccgcttttatataaatagaaactcaaactctaaattattt 48125838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 45460137 - 45460246
Alignment:
Q  37 atatataaaatcaatttattacccctttt-atataaatagaaatctaaactc-taaatcattttactcacatagactgagtttcagtatttcagatgaca 134  Q
    |||| ||||||||  |||||||||||||| |||||||||||||  ||||| | |||||||||| ||||||| |  |  ||||||| | ||||||||||||    
T  45460137 atatgtaaaatcacgttattacccctttttatataaatagaaacataaacccctaaatcatttcactcacacaatcgcagtttcaatctttcagatgaca 45460236  T
Q  135 ctcacttatc 144  Q
    ||||||||||    
T  45460237 ctcacttatc 45460246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 41477053 - 41477156
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    ||||||||||| |||||| ||||||||||| ||||||  |||| |||||| |||| | ||||| || |  ||| || || ||||||||||||| ||||||    
T  41477053 aaaatcaatttgttaccctttttatataaagagaaatggaaaccctaaattatttcattcacacagtcaaagtctccgtctttcagatgacacccactta 41477152  T
Q  143 tcat 146  Q
    ||||    
T  41477153 tcat 41477156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 25181229 - 25181091
Alignment:
Q  6 caccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactc-taaatcattttactcac 104  Q
    ||||| |||| ||||| |||||||| || |  | || ||| |||||||| || ||||| |||||||||||||| |||||||| ||||| |||| ||||||    
T  25181229 caccctgaactcatactcaaactcgtcccaattgtaaaaagtcaatttactatcccttctatataaatagaaacctaaactcttaaataatttcactcac 25181130  T
Q  105 atagactgagtttcagtatttcagatgacactcacttat 143  Q
    ||||   |||| |  || |||||||||| ||||||||||    
T  25181129 atagttagagtctttgtctttcagatgatactcacttat 25181091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 23719590 - 23719513
Alignment:
Q  44 aaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagt 121  Q
    ||||||||||| ||||| |||||||||||||||||   ||||| |||||||||| ||| ||| || |||||| |||||    
T  23719590 aaatcaatttactaccctttttatataaatagaaactcaaactataaatcatttcactaacacagtctgagtctcagt 23719513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 33293590 - 33293677
Alignment:
Q  12 gaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcatttta 99  Q
    |||||||||||||||||||  |   || || |||||||||||| ||||| |||||||| ||||||||   |||| |||||||||||||    
T  33293590 gaacccatacccaaactcgttccgaatgtagaaaatcaatttagtacccattttatatcaatagaaactcaaaccctaaatcatttta 33293677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 25155012 - 25155069
Alignment:
Q  127 agatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcgg 184  Q
    |||||||||||||||||||| |||| ||  |||||||||  |||||||||| ||||||    
T  25155012 agatgacactcacttatcatagttctcttttttctcctttcaaatctcacactctcgg 25155069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 13798226 - 13798198
Alignment:
Q  43 aaaatcaatttattaccccttttatataa 71  Q
    |||||||||||||||||||||||||||||    
T  13798226 aaaatcaatttattaccccttttatataa 13798198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 27252585 - 27252412
Alignment:
Q  12 gaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagact 111  Q
    |||||||||||||||||| ||||  || || ||  |||||||||||||| ||||||||||||||||| | |||   |||||||||| ||||||| ||       
T  27252585 gaacccatacccaaactcaccctgaatgtagaatttcaatttattacccattttatataaatagaaaccaaaatcataaatcatttcactcacacagtta 27252486  T
Q  112 gagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
    |||| ||||| |||||||||||||||||||||| | |||| || ||||||||||| | |||||||| ||||||||    
T  27252485 gagtatcagtctttcagatgacactcacttatcttagttctct-ctttctccttccatatctcacactctcggcc 27252412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 30904917 - 30905016
Alignment:
Q  44 aaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcacttat 143  Q
    ||||||||||| ||||||||||||||||||||||| | |||| || |||||||| ||||| |||| | |||||  ||| ||||| |||||||||||||||    
T  30904917 aaatcaatttactaccccttttatataaatagaaacccaaacccttaatcatttcactcatatagtcagagttgtagtctttcatatgacactcacttat 30905016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 3414634 - 3414699
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatag 108  Q
    ||||||| |||| |||||||||| |||||||| ||||| |||| ||||||||||| ||||||||||    
T  3414634 aaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatag 3414699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 27937725 - 27937664
Alignment:
Q  44 aaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcaca 105  Q
    |||| ||||||||||  |||||||||||||||||| |||||| ||||||||||| |||||||    
T  27937725 aaattaatttattacagcttttatataaatagaaacctaaaccctaaatcatttcactcaca 27937664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 37032199 - 37032322
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    ||||| |||||||||||| ||||||||||||| |||   |||| ||||||||||| ||||| | |  | |||| || || ||||||||||||  || |||    
T  37032199 aaaattaatttattacccattttatataaataaaaactcaaaccctaaatcatttcactcatacaatcagagtctcggtctttcagatgaca--caatta 37032296  T
Q  143 tcattgttcactcctttctccttcaa 168  Q
    |||| ||||  || ||||||||||||    
T  37032297 tcatagttctttcttttctccttcaa 37032322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 42243400 - 42243346
Alignment:
Q  17 catacccaaactcgccctacatatataaaatcaatttattaccccttttatataa 71  Q
    ||||||||||| |  |||| || || |||||||||||||||||||||||||||||    
T  42243400 catacccaaacccatcctaaatgtagaaaatcaatttattaccccttttatataa 42243346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 34214726 - 34214900
Alignment:
Q  11 cgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagac 110  Q
    ||||| ||||| ||||| || |||| || || ||| |||||||||| |||  |||||||||||||||| || ||||||||||||||| ||| ||| || |    
T  34214726 cgaactcatactcaaacccgtcctagatgtagaaagtcaatttattgccctgtttatataaatagaaa-ctcaactctaaatcatttcactaacacagtc 34214824  T
Q  111 tgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
     |||| ||||| ||||| |||||||||||||||||| |||| ||| |||||||||| | |||||||| | ||||||    
T  34214825 agagtctcagtctttcacatgacactcacttatcatagttcgctcttttctccttcgatatctcacactttcggcc 34214900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 35248444 - 35248616
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||| |||||||||||||||||||||| || |||  || || ||||   || ||| ||||||||||||||||||||||   |||| ||||||||||| ||    
T  35248444 gtacccaccccgaacccatacccaaacccgtcctgaatgtagaaaa---atatat-accccttttatataaatagaaaatgaaaccctaaatcatttcac 35248539  T
Q  101 tcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcaca 177  Q
    ||||| |||| |||| ||||| ||||| ||||||||| ||||| || |||| ||| | |||||||| | ||||||||    
T  35248540 tcacacagacagagtctcagtctttcaaatgacactcgcttattatagttctctcttatctccttccatatctcaca 35248616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 13531975 - 13531875
Alignment:
Q  5 tcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcac 104  Q
    |||||||||||||| || ||||| ||||| |||| || ||||||||||||||| || |||||||||||||||||   |||| ||||||||||| ||||||    
T  13531975 tcaccccgaacccacactcaaacccgccccacatgtagaaaatcaatttattatccattttatataaatagaaactcaaaccctaaatcatttcactcac 13531876  T
Q  105 a 105  Q
    |    
T  13531875 a 13531875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 25210365 - 25210262
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    ||||||||||| |||||| |||||||||||||||||   |||| ||||||||||| ||||||| || | |||| |||| |||| ||||| ||||||||||    
T  25210365 aaaatcaatttgttacccattttatataaatagaaactcaaaccctaaatcatttcactcacacagtcggagtctcagaattttagatggcactcactta 25210266  T
Q  143 tcat 146  Q
    ||||    
T  25210265 tcat 25210262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 29656833 - 29656980
Alignment:
Q  40 tataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcac 139  Q
    |||||||||||||||||| |||||||||||||||| ||| |  ||| ||||||||||| ||||||| || |  ||| ||||| |||||||||||||| ||    
T  29656833 tataaaatcaatttattatcccttttatataaataaaaaccataaccctaaatcatttgactcacacagtcaaagtctcagtctttcagatgacactgac 29656932  T
Q  140 -ttatcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
     |||||||  ||| ||| | |||||||  | |||||||| ||||||||    
T  29656933 tttatcataattctctcttatctccttacatatctcacattctcggcc 29656980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 30696954 - 30696850
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||| |||||||||| |||||||||||    || | || || |||||||||||||||||| ||||||||||||||||||  |||| ||||||||| | ||    
T  30696954 gtacccaccccgaactcatacccaaacctatcccaaatgtaaaaaatcaatttattacccattttatataaatagaaattcaaaccctaaatcatgtcac 30696855  T
Q  101 tcaca 105  Q
    |||||    
T  30696854 tcaca 30696850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 35409252 - 35409396
Alignment:
Q  40 tataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcac 139  Q
    |||||||||||||| |||||| ||  ||||||||| ||| | ||||||||||  |||| ||| ||| || | |||| ||||| || || |||||||||||    
T  35409252 tataaaatcaattttttacccgtt--atataaataaaaacccaaactctaaactatttcacttacacagtcagagtctcagtcttacatatgacactcac 35409349  T
Q  140 ttatcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
    ||||||| ||||| || ||||| | || | |||||||| ||||||||    
T  35409350 ttatcatagttcattcttttcttcgtccatatctcacactctcggcc 35409396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 13954733 - 13954611
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||| |||||||| ||||||||||||||||||    ||| ||||||||||| ||||||   |   |||| ||||  ||||||||||||||||||||    
T  13954733 aaaatcaacttattaccacttttatataaatagaaactcgaaccctaaatcatttcactcactcggtgagagtctcagactttcagatgacactcactta 13954634  T
Q  143 tcattgttcactcctttctcctt 165  Q
    | || |||| ||| |||||||||    
T  13954633 tgatagttctctcttttctcctt 13954611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 14095940 - 14095818
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||| |||||||| ||||||||||||||||||    ||| ||||||||||| ||||||   |   |||| ||||  ||||||||||||||||||||    
T  14095940 aaaatcaacttattaccacttttatataaatagaaactcgaaccctaaatcatttcactcactcggtgagagtctcagactttcagatgacactcactta 14095841  T
Q  143 tcattgttcactcctttctcctt 165  Q
    | || |||| ||| |||||||||    
T  14095840 tgatagttctctcttttctcctt 14095818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 31600873 - 31601003
Alignment:
Q  47 tcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcacttatcat 146  Q
    |||||||| ||| |||||||||||||||||||   |||||||||||||||| ||||| | ||   |||| | ||| ||||| ||||| ||||||||||||    
T  31600873 tcaatttaatacgccttttatataaatagaaactcaaactctaaatcatttcactcatacagttagagtcttagtctttcatatgacgctcacttatcat 31600972  T
Q  147 tgttcactcctttctccttcaaaatctcaca 177  Q
     |||| ||| | | |||||| | ||||||||    
T  31600973 agttctctcttctatccttccatatctcaca 31601003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 4961510 - 4961601
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcat 95  Q
    |||| |||| |||||||||||||||||||| ||   ||||| ||||| ||||||||||| |||||||   |||||||| | || |||||||||||    
T  4961510 gtacacacctcgaacccatacccaaactcgtcccgaatatagaaaatgaatttattacctcttttat---aatagaaacccaagctctaaatcat 4961601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 11959038 - 11958975
Alignment:
Q  8 ccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataa 71  Q
    |||||||| |||||||||||||  | |  || |||||||||||||||||||| |||||||||||    
T  11959038 ccccgaactcatacccaaactcatcatgaatgtataaaatcaatttattacctcttttatataa 11958975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 17845493 - 17845555
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaa-tctaaactctaaatcattttactcaca 105  Q
    ||||||||||||||| || ||||||||||||||||| || |||| ||||||||||| |||||||    
T  17845493 aaaatcaatttattatcctttttatataaatagaaactccaaac-ctaaatcatttcactcaca 17845555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 40359332 - 40359278
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattt 97  Q
    ||||||||||||||||  ||||||||||||||||||   ||| ||||||||||||    
T  40359332 aaaatcaatttattacatcttttatataaatagaaactcaaagtctaaatcattt 40359278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 11472813 - 11472947
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||||||  ||||||||||||||||||| | |||| ||||||||||| |||||| |||   |||| ||||| ||| ||||||||||||||||    
T  11472813 aaaatcaatttattataccttttatataaatagaaaccaaaaccctaaatcatttcactcacgtagttagagtctcagtcttttagatgacactcactta 11472912  T
Q  143 tcattgttcactcctttctccttcaaaatctcaca 177  Q
    |||| |||| ||| | |||||||| | ||||||||    
T  11472913 tcatagttctctcttatctccttccatatctcaca 11472947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 3774061 - 3773939
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    ||||||||||||||||||||||||||||| ||| || | |||| | ||||||||||||||||| || | |||||||||  ||||| ||||||| || |||    
T  3774061 aaaatcaatttattaccccttttatataattaggaacccaaacgcaaaatcattttactcacacagtcagagtttcagactttcatatgacacccattta 3773962  T
Q  143 tcattgttcactcctttctcctt 165  Q
    |||| ||||  || |||||||||    
T  3773961 tcatagttctatcttttctcctt 3773939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 23533672 - 23533806
Alignment:
Q  11 cgaacccatacccaaactcgccctacatat-ataaaatcaattta-ttaccccttttatataaatagaaatctaaactctaaatcattttactcacatag 108  Q
    |||||||||||||||||||| ||   || | | |||||||||||| | ||||||||| ||||| |||||| | |||||||||||||||| ||||||||||    
T  23533672 cgaacccatacccaaactcgtcccgaatgtaaaaaaatcaatttactaaccccttttgtataattagaaacccaaactctaaatcatttcactcacatag 23533771  T
Q  109 actgagtttcagtatttcagatgacactcacttat 143  Q
     | |||| ||||| |||||||||||||||| ||||    
T  23533772 tcagagtctcagtgtttcagatgacactcatttat 23533806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 19440112 - 19440212
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    ||||||||||||  ||||||||  |||||||||||| | |||||||||||||||| |||||||||| | |||| ||||| || ||||||||||||| |||    
T  19440112 aaaatcaatttaccacccctttggtataaatagaaacccaaactctaaatcatttcactcacatagtcagagtctcagtgttccagatgacactcattta 19440211  T
Q  143 t 143  Q
    |    
T  19440212 t 19440212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 23475365 - 23475465
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||| ||||| |||| |||||||| ||| | |||||||||||||||| |||||||||| | ||||  |||| |||||||||||||||| |||    
T  23475365 aaaatcaatttactacccgttttgtataaataaaaacccaaactctaaatcatttcactcacatagtcagagtcccagtgtttcagatgacactcattta 23475464  T
Q  143 t 143  Q
    |    
T  23475465 t 23475465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 3157117 - 3156952
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttac 100  Q
    |||| ||| ||||||| |||||||||| || || | | ||| ||||||||||||||||||||  |||||||||||||| | |||  ||||||| ||| ||    
T  3157117 gtacccacaccgaacctatacccaaacccgtcccaaacatagaaaatcaatttattacccctactatataaatagaaacccaaatcctaaatcctttcac 3157018  T
Q  101 tcacatagactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttc 166  Q
    || | ||| | |||| |  || ||| ||||||||||||||||| || |||| ||| ||| ||||||    
T  3157017 tcgcgtagtcagagtcttggtcttttagatgacactcacttattatagttctctcttttttccttc 3156952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 31345518 - 31345384
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||||||| ||||  |||||||||||||||||   |||||||| ||||||| ||||||| |  |  ||| |||||  || ||||||||||||||||    
T  31345518 aaaatcaatttactaccatttttatataaatagaaactcaaactctatatcatttcactcacacaatcaaagtctcagtcatttagatgacactcactta 31345419  T
Q  143 tcattgttcactcctttctccttcaaaatctcaca 177  Q
    ||||  ||| ||| ||||| |||| | ||||||||    
T  31345418 tcataattctctcttttcttcttccatatctcaca 31345384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 43550524 - 43550659
Alignment:
Q  50 atttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcacttatcattgt 149  Q
    |||||||||||||| |||||||||||||| | |||| ||||||||||| ||||| || | | |||| ||||| |||||  | ||||| | ||||||   |    
T  43550524 atttattaccccttctatataaatagaaacccaaaccctaaatcatttcactcaaat-gtcagagtctcagtctttcaattaacacttatttatcacatt 43550622  T
Q  150 tcactcctttctccttcaaaatctcacaatctcggcc 186  Q
    ||  || |||||||||| | |||||||||||||||||    
T  43550623 tctttcttttctccttccatatctcacaatctcggcc 43550659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 29292694 - 29292640
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattt 97  Q
    |||||||||||| ||||||||||||||||| ||||||| |||| |||||| ||||    
T  29292694 aaaatcaatttactaccccttttatataaagagaaatccaaaccctaaattattt 29292640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 37218030 - 37217853
Alignment:
Q  9 cccgaacccataccc-aaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacata 107  Q
    ||||||| ||||||| |||| || |||  ||||| |||||||||| |||| | ||||| ||||||||||||   ||   ||||||||||||||| ||| |    
T  37218030 cccgaactcataccccaaacccgtcctgaatatagaaaatcaatt-attatctcttttgtataaatagaaactcaatgcctaaatcattttactaacaca 37217932  T
Q  108 gactgagtttcagtatttcagatgacactcacttatcattgttcactcctttctccttcaaaatctcacaatctcggcc 186  Q
      | |||| || || ||||| ||||||||||| |||||| |||| ||| | |||||||| | |||||||| ||||||||    
T  37217931 atcagagtctcggtttttcatatgacactcacatatcatagttctctcttctctccttccatatctcacactctcggcc 37217853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 6557827 - 6557925
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatct-aaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactt 141  Q
    ||||||| ||||||| || ||| ||| |||||||| ||| |||||||||||||||| ||||||| |  |  ||| ||||| |||||||||||||||||||    
T  6557827 aaaatcagtttattatccttttcatagaaatagaa-tctcaaactctaaatcatttcactcacacaatcaaagtctcagtctttcagatgacactcactt 6557925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 4681 - 4804
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactta 142  Q
    |||||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||||| || | ||||  | || ||| |||| |||||||||||    
T  4681 aaaatcaaattataaccccttttatataaatagaaatcaaaactctaaatcatttcactcacacagtcagagtcacggtcttttagataacactcactta 4780  T
Q  143 tcattgttcactcctttctccttc 166  Q
    |||| |||| ||| ||| ||||||    
T  4781 tcatagttctctcttttttccttc 4804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 14887 - 14791
Alignment:
Q  1 gtactcaccccgaacccatacccaaactcgccctacatatataaaatcaatttattaccccttttatataaatagaaatctaaactctaaatcattt 97  Q
    |||| ||||| |||| ||||||||||| || |||  |  || || ||||||||||| |||||||||||||||||||||  |||||  ||||||||||    
T  14887 gtacccaccctgaactcatacccaaacccgtcctgaaggtaaaacatcaatttatttccccttttatataaatagaaacttaaacattaaatcattt 14791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 1098 - 995
Alignment:
Q  43 aaaatcaatttattaccccttttatataaatagaaa-tctaaactctaaatcattttactcacatagactgagtttcagtatttcagatgacactcactt 141  Q
    ||||| |||||||||||| ||||||||||||||||| || || || |||||||||| |||||| | | |  ||| ||| | ||| |||||||| ||||||    
T  1098 aaaattaatttattacccattttatataaatagaaactcaaatct-taaatcatttcactcacgtggtcaaagtctcattctttaagatgacaatcactt 1000  T
Q  142 atcat 146  Q
    |||||    
T  999 atcat 995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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