View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9436_high_3 (Length: 253)
Name: NF9436_high_3
Description: NF9436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9436_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 37142215 - 37142440
Alignment:
| Q |
19 |
ggaaattcctagcaatttcgaagtttcttcctacctactgatatattattaattttatggattttgtgcatgtaatcaaaaagtgattaagctagattca |
118 |
Q |
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| T |
37142215 |
ggaaattcctagcaatttcgaagtttcttcctagctactgatatagtattaattttatggattttgtgcatctaatcaaaaagtgattaagctagattca |
37142314 |
T |
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| Q |
119 |
cagtcactaattattaaacaattaacaatgacatagatgtgtatatatgtgccatcacaattgataaaccgtcaattaacacctactccctaatatgaat |
218 |
Q |
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| T |
37142315 |
cagtcactaattattaaacaattaacaatgacatagatgtatatatatgtgccatcacaattgataaaccgtcaattaacacctactccctaatatgaat |
37142414 |
T |
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| Q |
219 |
actataatccagacaaggtcctttgc |
244 |
Q |
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| T |
37142415 |
actataatccagacaaggtcctttgc |
37142440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 8647010 - 8647105
Alignment:
| Q |
117 |
cacagtcactaattattaaacaattaacaatgacatagatgtgtatatatgtgccatcacaattgat-aaaccgtcaattaacacctactccctaa |
211 |
Q |
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| T |
8647010 |
cacaatcactaattattaaacaattaacaataacatatatgtatatatatgtgccttcacaattaatcaaatggtcagttaacacctattccctaa |
8647105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 11831342 - 11831250
Alignment:
| Q |
24 |
ttcctagcaatttcgaagtttcttcctacctactgatat-attattaattttatggattttgtgcatgtaatcaaaaagtgattaagctagatt |
116 |
Q |
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| T |
11831342 |
ttcctagcaatttcgttgtttcttcctagctatttatattattat-aattttatttttttagtgtatctaatcaaaacgtgattaagctagatt |
11831250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 152
Target Start/End: Complemental strand, 29863108 - 29863080
Alignment:
| Q |
124 |
actaattattaaacaattaacaatgacat |
152 |
Q |
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| T |
29863108 |
actaattattaaacaattaacaatgacat |
29863080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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