View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9436_low_1 (Length: 720)
Name: NF9436_low_1
Description: NF9436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9436_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 328 - 703
Target Start/End: Original strand, 43170848 - 43171223
Alignment:
| Q |
328 |
gattggatgatgactacattaccaaccaaactctatcatgggttctgaatgctctccttactttcaaccttaattaaaaccgacccaaattgaatcatta |
427 |
Q |
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| T |
43170848 |
gattggatgatgactacattaccaaccaaactctatcatgggttctgaatgctctccttactttcaaccttaattaaaaccgacccaaattgaatcatta |
43170947 |
T |
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| Q |
428 |
acacctcattcaccagtttataactttttagaaccaattatcttattgttcagtccttgatgatataagtggcaattactttgataacattatgataatc |
527 |
Q |
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| T |
43170948 |
acacctcattcaccagtttataactttttagaaccaattatcttattgttcagtccttgatgatataagtggcaattactttgataacattatgataatc |
43171047 |
T |
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| Q |
528 |
attcttatacatatatgaaattacatcagaaacttaagagaatcatcttattctaaaaaagataaatgctaaaagatataattaagaactttataaatgg |
627 |
Q |
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| T |
43171048 |
attcttatacatatatgaaattacatcagaaacataagagactcatcttattctaaaaaagataaatcctaaaagatataattaagaactttatatatgg |
43171147 |
T |
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| Q |
628 |
tgttataatttccctactatggagattgagcaatggtcttagtttgaattggagaagcacaacacttgctgcagca |
703 |
Q |
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| T |
43171148 |
tgttataatttccctactatggagattgagcaatggtcttagtttgaattggagaagcacaacacttgctgcagca |
43171223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 43170535 - 43170799
Alignment:
| Q |
16 |
ggacatcagttctaccccagtctaataaattcaaggggaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcac |
115 |
Q |
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| T |
43170535 |
ggacaccagttctaccccaatctaataaattcaaggggaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcac |
43170634 |
T |
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| Q |
116 |
agaca--tcaaaaaacatgcaaaattgaaattaaaataaagaaatttgtatgtagtacttcaaatatacaactttttgtttaagtctctaaaaatatttg |
213 |
Q |
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| T |
43170635 |
aaacacatcaaaaaacatgcaaaattgaaattaaaataaa-aaatttgtatgtagtacttcaaatatacaacattttgtttaagtctctaaaaatatttg |
43170733 |
T |
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| Q |
214 |
ttttacttttcgtccctacaaatttaccacgttttatgtttgatcatgttttgatttaagacttgc |
279 |
Q |
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| T |
43170734 |
ttttacttttcgtccctacaaatttaccacgttttatgtttgatcatgttttgatttaagacttgc |
43170799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 43217801 - 43217537
Alignment:
| Q |
16 |
ggacatcagttctaccccagtctaataaattcaaggggaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcac |
115 |
Q |
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| T |
43217801 |
ggacaccagttctaccccaatctaataaattcaaggggaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcac |
43217702 |
T |
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| Q |
116 |
agaca--tcaaaaaacatgcaaaattgaaattaaaataaagaaatttgtatgtagtacttcaaatatacaactttttgtttaagtctctaaaaatatttg |
213 |
Q |
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| T |
43217701 |
aaacacatcaaaaaacatgcaaaattgaaattaaaataaa-aaatttgtatgtagtacttcaaatacacaactttttgtttaagtctctaaaaatatttg |
43217603 |
T |
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| Q |
214 |
ttttacttttcgtccctacaaatttaccacgttttatgtttgatcatgttttgatttaagacttgc |
279 |
Q |
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| T |
43217602 |
ttttacttttcgtccttacaaatttaccatgttttatgtttgatcatgttttgatttaagacttgc |
43217537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 636 - 696
Target Start/End: Original strand, 43161017 - 43161077
Alignment:
| Q |
636 |
tttccctactatggagattgagcaatggtcttagtttgaattggagaagcacaacacttgc |
696 |
Q |
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| T |
43161017 |
tttccctactatggagattgacctatggtctgagtttgaattggagaagcacaacacttgc |
43161077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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