View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9436_low_11 (Length: 252)
Name: NF9436_low_11
Description: NF9436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9436_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 99 - 249
Target Start/End: Complemental strand, 8142532 - 8142382
Alignment:
| Q |
99 |
acatatgtaattacccttttgcagatgtgggaagatctgatttacaaagctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttc |
198 |
Q |
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| T |
8142532 |
acatatgcaattacccttttgcagatgtgggaagatctgatttacaaagctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttc |
8142433 |
T |
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| Q |
199 |
atgaaccttctcctggaaatgtactttactttcacactctctttctcaagt |
249 |
Q |
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| T |
8142432 |
atgaaccttctcctggaaatgtactttactttcacactctctttctcaagt |
8142382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 8142618 - 8142564
Alignment:
| Q |
13 |
cagatgtatgttccttctaaatttagataatgaagataaaaattgaaactttacc |
67 |
Q |
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| T |
8142618 |
cagatgtatgttccttctaaattaagataatgaagataaaaattgaaactttacc |
8142564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 7344376 - 7344478
Alignment:
| Q |
121 |
agatgtgggaagatctgatttacaaagctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaaccttctcctggaaatgt |
220 |
Q |
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| T |
7344376 |
agatgtgggaggatctgattcaaaaagcaaaagatggagggttagatgttattgatacttatgtgttttggaatgttcatgaaccttctcctggcaatgt |
7344475 |
T |
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| Q |
221 |
act |
223 |
Q |
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| T |
7344476 |
act |
7344478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 5229529 - 5229603
Alignment:
| Q |
147 |
gctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaaccttctcctggaaatgta |
221 |
Q |
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| T |
5229529 |
gctaaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagccttctcctggaaatgta |
5229603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 5450755 - 5450822
Alignment:
| Q |
147 |
gctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaaccttctcctgg |
214 |
Q |
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| T |
5450755 |
gctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaaccttcacctgg |
5450822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 17124391 - 17124454
Alignment:
| Q |
147 |
gctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaaccttctc |
210 |
Q |
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| T |
17124391 |
gctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctc |
17124454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 42990233 - 42990163
Alignment:
| Q |
144 |
aaagctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaaccttctcctgg |
214 |
Q |
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| T |
42990233 |
aaagctaaggaaggtggtttggatgtgattcagacttatgttttttggaatggacatgaaccttcacctgg |
42990163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 44352775 - 44352720
Alignment:
| Q |
165 |
gatgtaattgaaacctatgtgttttggaatgttcatgaaccttctcctggaaatgt |
220 |
Q |
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| T |
44352775 |
gatgtcattgaaacctatgttttctggaatggtcatgagctttctcctggaaatgt |
44352720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 44359750 - 44359689
Alignment:
| Q |
144 |
aaagctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaacc |
205 |
Q |
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| T |
44359750 |
aaagcaaaacaaggaggattggatgttattcaaacttatgtgttttggaatctacatgaacc |
44359689 |
T |
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