View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9436_low_3 (Length: 430)
Name: NF9436_low_3
Description: NF9436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9436_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 31405898 - 31405948
Alignment:
| Q |
79 |
aacaatggtgtgcactctaaccctactaataagtgaattttggatgaacaa |
129 |
Q |
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| T |
31405898 |
aacattggtgtgcactctaaccctactaataagtgcattttggaagaacaa |
31405948 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 2591627 - 2591599
Alignment:
| Q |
201 |
caatagttttttatttcattgtctgttct |
229 |
Q |
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| T |
2591627 |
caatagttttttatttcattgtctgttct |
2591599 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 13007224 - 13007192
Alignment:
| Q |
12 |
catgtaccatcttacaaggtcatagctttcaat |
44 |
Q |
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| T |
13007224 |
catgtaccatcttacaagttcatagctttcaat |
13007192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 13101024 - 13100992
Alignment:
| Q |
12 |
catgtaccatcttacaaggtcatagctttcaat |
44 |
Q |
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| T |
13101024 |
catgtaccatcttacaagttcatagctttcaat |
13100992 |
T |
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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 13204483 - 13204451
Alignment:
| Q |
12 |
catgtaccatcttacaaggtcatagctttcaat |
44 |
Q |
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| T |
13204483 |
catgtaccatcttacaagttcatagctttcaat |
13204451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 30368276 - 30368308
Alignment:
| Q |
12 |
catgtaccatcttacaaggtcatagctttcaat |
44 |
Q |
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| T |
30368276 |
catgtaccatcttacaagttcatagctttcaat |
30368308 |
T |
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