View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9436_low_5 (Length: 424)
Name: NF9436_low_5
Description: NF9436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9436_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 3747927 - 3747526
Alignment:
| Q |
17 |
cacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtgga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3747927 |
cacttagtgtcttggttttgcggaacaacaaattccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtgga |
3747828 |
T |
|
| Q |
117 |
cattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcagaatttatc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3747827 |
cattgctttcaacaatttcaatggaaaactatctgaaaaatatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcggaatttatc |
3747728 |
T |
|
| Q |
217 |
cccacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacag |
316 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3747727 |
ccgacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacag |
3747628 |
T |
|
| Q |
317 |
ccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaacgatctctc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3747627 |
ccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaacaatctctc |
3747528 |
T |
|
| Q |
417 |
tg |
418 |
Q |
| |
|
|| |
|
|
| T |
3747527 |
tg |
3747526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 5557945 - 5557544
Alignment:
| Q |
17 |
cacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtgga |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || |||||||| || ||||||||| |||||| | |||||||||||||||||||||||||||||| || |
|
|
| T |
5557945 |
cacttagtgttttggttttgcggaacaacatattgcatggttcaatagaatgttcacattcactcgaaaataagccttggaaaatgattcaaattgttga |
5557846 |
T |
|
| Q |
117 |
cattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcagaatttatc |
216 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||| ||||||||| ||||||||||||||| || ||| ||| ||||| |||||||||| ||| || |
|
|
| T |
5557845 |
tattgctttcaacaatttcaatgggaagctacctgaaaaatatttcacatcatgggaaagaatgaagcgtgaagaaaatgataatgtatcagactttgtc |
5557746 |
T |
|
| Q |
217 |
cccacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacag |
316 |
Q |
| |
|
| ||||| ||| |||| ||||||| || ||||||| ||| |||||||||||||||| | | |||||||| ||||||||||||||||| || ||| |
|
|
| T |
5557745 |
cacacaggggattcattattatcatattaccaggatagtgcgacagtttccaataaaggtcgacaaatggagttggttaaaattctaacaatatttacaa |
5557646 |
T |
|
| Q |
317 |
ccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaacgatctctc |
416 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| || | ||||||||| | ||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
5557645 |
ccattgacttctcatccaatcattttgaaggaccaataccagatgtgctaatggacttcaaagcaatccatgttctcaacttttcaaacaatgctctctc |
5557546 |
T |
|
| Q |
417 |
tg |
418 |
Q |
| |
|
|| |
|
|
| T |
5557545 |
tg |
5557544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 5849240 - 5849633
Alignment:
| Q |
17 |
cacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtgga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5849240 |
cacttagtgtcttggttttgcggaacaatagattgcatggttccatagaatgttcacattcactagaaaataagccttggaaaatgattcaaattgtgga |
5849339 |
T |
|
| Q |
117 |
cattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcagaatttatc |
216 |
Q |
| |
|
||||||||| |||||||||||||||||| || | ||||| ||||||| |||||||||||||||||||||||||| ||||| | ||||||| || ||| |
|
|
| T |
5849340 |
cattgctttgaacaatttcaatggaaaaataccagaaaaatatttcatgacatgggaaagaatgatgcatgatgaaaatgattctatatcagacttcatc |
5849439 |
T |
|
| Q |
217 |
cccacagtgg---aggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttca |
313 |
Q |
| |
|
|| ||| || || || ||||||| || ||||||||||| |||||||||||||||||| | || ||| | |||||||||| |||||| | |
|
|
| T |
5849440 |
tacagcatgggaaagaacttttactcatattaccaagatagtgtgaccgtttccaataaaggtcaaaaaattaagtaggaaaaaattctaaaaatcttta |
5849539 |
T |
|
| Q |
314 |
cagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
407 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || ||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
5849540 |
cagccattgatttctcatccaatcatttcgaaggaccaataccagagttgctaatgaaatttaaggcaatccatgttctcaacttttcaaacaa |
5849633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 5887465 - 5887855
Alignment:
| Q |
17 |
cacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtgga |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| ||||||||| || |||||||| ||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5887465 |
cacttagtgtcttggttttgcgaaacaataaatttcatggttccatagaatgttcagattctctagaaaataagccttggaaaatgattcaaattgtgga |
5887564 |
T |
|
| Q |
117 |
cattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcagaatttatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||| ||||||||| ||||||||||||||||||| |||||| | ||| |||||| || || |
|
|
| T |
5887565 |
cattgctttcaacaatttcaatggaaaaataccagaaaaatatttcacaacatgggaaagaatgatgcaagatgaaaacgatttgaaatcagacttcat- |
5887663 |
T |
|
| Q |
217 |
cccacagtggaggca--ttcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcac |
314 |
Q |
| |
|
||| | || | ||| | ||||||| || ||||||||||| |||||||||||||||||||| | ||| || |||||||||||||||||| || |
|
|
| T |
5887664 |
-ccatatgagatttaacttcttctcatattaccaagatagtgtgacagtttccaataaaggtcaagaacttaagtatgataaaattctaacaatctttac |
5887762 |
T |
|
| Q |
315 |
agccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
407 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||| || | |||||||||||||| |||||| ||| |||| |||||||||||||||| |
|
|
| T |
5887763 |
agccattgatttctcatccaatcattttgaaggacaaataccagacgtgctaatgaaatttaaagcactccttgttttcaacttttcaaacaa |
5887855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 5563739 - 5563329
Alignment:
| Q |
17 |
cacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtgga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||||| || |||||||||| ||||| ||||| ||||||||||||| |||||||||| |||| |
|
|
| T |
5563739 |
cacttagtgtcttggttttgcggaacaatagattgcatggttccatagaatgttcactctcactggcaaaaaagccttggaaaaggattcaaattttgga |
5563640 |
T |
|
| Q |
117 |
cattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcagaatttatc |
216 |
Q |
| |
|
||| |||||||||||||||| |||||||||| ||||| | ||||||| ||||||||||||||||| || || || |||||| || |||||| |||||| |
|
|
| T |
5563639 |
catggctttcaacaatttcagtggaaaactacctgaattttttttcacaacatgggaaagaatgatgaataataaagatgatggtgaatcagactttatc |
5563540 |
T |
|
| Q |
217 |
cccacagtgga---ggcattca------acccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaa |
307 |
Q |
| |
|
|| || ||| || | ||| || |||||||||| |||||| |||| ||||||| |||||||||| | || ||||| ||||||||| ||| || |
|
|
| T |
5563539 |
tacataggggaccgggaactcacatcgtactcatattatcaggatagtatgacagtttccattaaaggtcaacagatagagttggttaaaattttaaaaa |
5563440 |
T |
|
| Q |
308 |
tcttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
407 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||| | || || ||||| ||| | ||||||||| | |||||||||||||||||||||| |
|
|
| T |
5563439 |
tcttcacagccattgatttatcatccaatcattttgaaggaccactaccaaatgtgctgatggacttcaaagcactttatgttctcaacttttcaaacaa |
5563340 |
T |
|
| Q |
408 |
cgatctctctg |
418 |
Q |
| |
|
| |||||||| |
|
|
| T |
5563339 |
tgctctctctg |
5563329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 5896310 - 5896706
Alignment:
| Q |
17 |
cacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactt---tcactagcaaataagccttggaaaatgattcaaattgt |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||| || ||||||||| | ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5896310 |
cacttagtgtattggttttgcggaacaacaaacttcatggttccatagaatgttcacatcattcactagaaaataagccttggaaaatgattcaaattgt |
5896409 |
T |
|
| Q |
114 |
ggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcagaattt |
213 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||| || || || ||||||||| ||||| | |||||||| | ||| | ||||||| ||| |
|
|
| T |
5896410 |
ggacattgctttcaacaatttcaacggaaaactacaagaaaaatactttgcaacatgggaaaaaatgaagaatgatgaaaacaatgttctatcagacttt |
5896509 |
T |
|
| Q |
214 |
atccccacagtgga---ggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatct |
310 |
Q |
| |
|
|||| ||| | ||| | || | || |||||||||| ||||||||||| |||| | ||||||||||| ||| |||| |||||||| ||||||||| |
|
|
| T |
5896510 |
atccacacgggggaaaggacagactacacatattatcaggatagtgtgacaatttctactaaaggtcaagtgatgcagttgcttaaaattttaacaatct |
5896609 |
T |
|
| Q |
311 |
tcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
407 |
Q |
| |
|
| |||||||||||||||||||| |||||||| ||||||||||| || | ||| | ||| ||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
5896610 |
ttacagccattgatttctcatcaaatcatttcgaaggaccaataccacatgtgttgatggaattcaaagcaatccattttctcaacttttcgaacaa |
5896706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 5612543 - 5612156
Alignment:
| Q |
17 |
cacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtgga |
116 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||||||| || ||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5612543 |
cacttagcgtcttggtgttgcggaacaacaaattgcatggttccatagaatgtacacactcactagaaaataagccttggaaaatgattcaaattgtgga |
5612444 |
T |
|
| Q |
117 |
cattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcagaatttatc |
216 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||| | |||| | |||||| ||||||||| ||||||||| |||||| | ||||||||| ||||| |
|
|
| T |
5612443 |
cattgcattcaatgatttcaacggaaaactaccagaaacattcttcacaacatgggaaaaaatgatgcacgatgaa------gttgtatcagactttatt |
5612350 |
T |
|
| Q |
217 |
cccacagtggaggcattcaaccc----atattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttc |
312 |
Q |
| |
|
| || || || || ||| || ||||||||| |||||||| | |||| | |||||||||||| ||| |||| ||||||||||||| ||||||| |
|
|
| T |
5612349 |
cacatag-ggcggacgtcatccttgttatattatcaggatagtgtatctatttctactaaaggtcaagagatgaagttggttaaaattctaaaaatcttc |
5612251 |
T |
|
| Q |
313 |
acagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
407 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5612250 |
atggccattgatttctcatccaatcactttgaaggaccaataccagaggggctgatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
5612156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 5857078 - 5856691
Alignment:
| Q |
17 |
cacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtgga |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||| || ||||||||| |||||||| ||||||||| |||||||||||||||||||| || |
|
|
| T |
5857078 |
cacttagtgtattggttttgcggaacaacaaacttcatggttccttagaatgttcacattcactagaaaataagccgtggaaaatgattcaaattgtcga |
5856979 |
T |
|
| Q |
117 |
cattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcagaatttatc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| || | |||||||||||| || ||| | |||||| |||||| |
|
|
| T |
5856978 |
cattgctttcaacaatttcaatggaaaactacttgaaaagtatttca---aatgggaacgatttatgcatgatgaaaataatgttcgatcagactttatc |
5856882 |
T |
|
| Q |
217 |
cccacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacag |
316 |
Q |
| |
|
| | || | | |||||||||| ||||||||||| ||||||||||||||||| | |||||||| |||| ||||||||||||||||||| |
|
|
| T |
5856881 |
cattctcaggcgaacgaggaatcatattatcaggatagtgtgacaatttccaataaaggtcaacaaatggagttgattaagattctaacaatcttcacag |
5856782 |
T |
|
| Q |
317 |
ccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
407 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||| || | | | ||||| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
5856781 |
ccattgatttatcatccaatcattttgaaggtaaaataccagaagcgacgatgaacttcaaagcacttcatgttctcaacttttcaaacaa |
5856691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 5552178 - 5551790
Alignment:
| Q |
19 |
cttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggaca |
118 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | ||||| || || ||||||||| ||||| |||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
5552178 |
cttagtgtattggttttacggaacaacaagtttcatggaaccatagaatgttcacattcacaagcagataagcattggaaaatgattcagattgtggaca |
5552079 |
T |
|
| Q |
119 |
ttgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcagaatttatccc |
218 |
Q |
| |
|
|| ||| ||||||||||||||| || || ||||| || ||| || | ||||| ||||||||||| |||||| ||||| | || |||| || |||| |
|
|
| T |
5552078 |
tttcttgcaacaatttcaatggtaagttacaagaaaaatacttcgcaacttgggatagaatgatgcaagatgaagttgatgttataccagacttcatcca |
5551979 |
T |
|
| Q |
219 |
cacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacagcc |
318 |
Q |
| |
|
||| | | | | |||| ||||| ||||||||||| ||||| | ||||||||| | ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
5551978 |
cacgcgaaacaaagactgctcatactatcaggatagtgtgacagtttctattaaaggtcagcaaatgaagtttgttaaaattctagcaatcttcacagcc |
5551879 |
T |
|
| Q |
319 |
attgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
407 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || |||| || ||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5551878 |
attgatttctcatccaatcattttgaaggaccaataccacaggttctgatggaattcaaagcaatccatgttctcaacttttcgaacaa |
5551790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 5854232 - 5854608
Alignment:
| Q |
19 |
cttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggaca |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||| ||| | ||||||||| ||||| |||| |||||| || |||||||||||| |||||||||| |
|
|
| T |
5854232 |
cttagtgtcttggttttgcggaataacaagtttcatggatccatggaatgttcacattcacaagcagataagcattagaaaatgattcagattgtggaca |
5854331 |
T |
|
| Q |
119 |
ttgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcagaatttatccc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || ||| || ||||||| ||||| |||| |||||| |||||| | ||||||| || |||| |
|
|
| T |
5854332 |
ttgctttcaacaatttcaatggaaaactacaagaaaaatacttcgcaacatgggatagaat--tgcaagatgaagatgatgttatatcagacttcatcca |
5854429 |
T |
|
| Q |
219 |
cacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaac-----aatcttca |
313 |
Q |
| |
|
||| | || | | || |||||||||| |||| |||||| ||||||||||||||||| || ||| |||| |||||||||||||| |||||||| |
|
|
| T |
5854430 |
cacgctaaagaaagactacacatattatcaggatactgtgacagtttccaataaaggtcaggagatgaagttggttaaaattctaacaatataatcttca |
5854529 |
T |
|
| Q |
314 |
cagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
407 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5854530 |
cagcgattgatttctcatccaatcattt--------------cgaaggt-ctgatgaaattcaaagcagtccatgttctcaacttttcaaacaa |
5854608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 5604428 - 5604250
Alignment:
| Q |
17 |
cacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagcct---tggaaaatgattcaaattgt |
113 |
Q |
| |
|
|||| ||||| ||||||||| |||||||||||| |||||||| || ||||||||| || | ||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
5604428 |
cactcagtgtattggttttgtggaacaacaaattttatggttccatagaatgttcacatttagtagaaaacaagcctaattggaaaatgattcaaattgt |
5604329 |
T |
|
| Q |
114 |
ggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcac-agcatgggaaagaatgatgcatgatgaa |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||| |||||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
5604328 |
ggacattgcttccaacaatttcaatggaaaactacttgaaaagattttcacgagc-tgggacagaatgaagcatgatgaa |
5604250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 308 - 407
Target Start/End: Original strand, 5890816 - 5890915
Alignment:
| Q |
308 |
tcttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
407 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||||| || |||| ||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
5890816 |
tctttacagccattgatttctcatccaattattttgaaggaccaataccagaggtcctaatgaaatttaaagcagtccatgttctcaacttttcaaacaa |
5890915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 407
Target Start/End: Complemental strand, 5604175 - 5604038
Alignment:
| Q |
270 |
taaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatg |
369 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||||||| | ||||| ||||||||||||||| || ||||||||||||||| || | |||| ||||| |
|
|
| T |
5604175 |
taaaggtcaacaaatggagttggttaaaattctaacaatttacacagtcattgatttctcatccaactcttttgaaggaccaataccaatggtggtaatg |
5604076 |
T |
|
| Q |
370 |
aaattcaaagcaatccatgttctcaacttttcaaacaa |
407 |
Q |
| |
|
| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
5604075 |
gacttcaaagcactttatgttctcaacttttcaaacaa |
5604038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 5572654 - 5572733
Alignment:
| Q |
271 |
aaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaaggacc |
350 |
Q |
| |
|
||||||||| | ||||| || ||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
5572654 |
aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacc |
5572733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 5584861 - 5584940
Alignment:
| Q |
271 |
aaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaaggacc |
350 |
Q |
| |
|
||||||||| | ||||| || ||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
5584861 |
aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacc |
5584940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 347
Target Start/End: Original strand, 5540791 - 5540867
Alignment:
| Q |
271 |
aaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaagg |
347 |
Q |
| |
|
||||||||| | ||||||| ||||||||| ||||| ||||||||||| | || ||||||| || ||||||||||| |
|
|
| T |
5540791 |
aaaggtcaacagatggagtacgttaaaattttaacagtcttcacagccgtcgacctctcatccaaccattttgaagg |
5540867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 1481944 - 1481780
Alignment:
| Q |
241 |
tattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcatt |
340 |
Q |
| |
|
|||||||| |||| |||||| ||| | |||||||||| | |||||||| || |||||||| ||||| ||||| |||||||||||||||| ||||| | |
|
|
| T |
1481944 |
tattatcaggataatgtgacagttatgagtaaaggtcaaaacatggagttagtaaaaattctgacaat--tcacaaccattgatttctcatccaatcact |
1481847 |
T |
|
| Q |
341 |
ttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
407 |
Q |
| |
|
|||||||| || || ||| |||||| | | |||||| ||||||||||||||||||||||||| |
|
|
| T |
1481846 |
ttgaaggattgataccagaggatctaatggatctgaaagcactccatgttctcaacttttcaaacaa |
1481780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 1482101 - 1482019
Alignment:
| Q |
81 |
agcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttca |
163 |
Q |
| |
|
|||||| || || ||| ||||||||||||||||||| ||||||||||||||||| | ||| || ||| | ||||| ||||||| |
|
|
| T |
1482101 |
agcaaaaaatccatggcaaatgattcaaattgtggatattgctttcaacaattttagtggtaagctaccagaaaaatatttca |
1482019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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