View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9436_low_8 (Length: 263)

Name: NF9436_low_8
Description: NF9436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9436_low_8
NF9436_low_8
[»] chr1 (3 HSPs)
chr1 (35-245)||(15500597-15500806)
chr1 (123-232)||(15249760-15249868)
chr1 (181-232)||(11896875-11896926)
[»] chr7 (2 HSPs)
chr7 (65-246)||(18045705-18045884)
chr7 (65-139)||(3221193-3221267)
[»] chr2 (2 HSPs)
chr2 (166-232)||(32121615-32121681)
chr2 (181-228)||(34415002-34415049)
[»] chr3 (2 HSPs)
chr3 (168-246)||(4159547-4159625)
chr3 (168-246)||(4143739-4143817)
[»] chr8 (2 HSPs)
chr8 (187-247)||(17018183-17018243)
chr8 (187-247)||(17548620-17548680)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 35 - 245
Target Start/End: Complemental strand, 15500806 - 15500597
Alignment:
Q  35 agaaggagctggaggggaaatgagattgaagtaaagtttgttttctttctaggtcaaaggtgactttaatggtcaatcaaacacccaaacaaatcaacgt 134  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15500806 agaagaagatggaggggaaatgagactgaagtaaagtttgttttctttctaggtcaaaggtgactttaatggtcaatcaaacacccaaacaaatcaacgt 15500707  T
Q  135 tacaccccaagcagatggaacgaatttttatagtggcaccatcaaatttgaccatttatacaatctctaaaatattagagaaacttttttgtatgaaatg 234  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  15500706 tacaccccaagcagatggaacgaattttaatagtggcaccatcaaatttgaccatttatacaatctctaaaatattagagtaac-tttttgtatgaaatg 15500608  T
Q  235 tcaacggtgga 245  Q
    |||||||||||    
T  15500607 tcaacggtgga 15500597  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 15249868 - 15249760
Alignment:
Q  123 acaaatcaacgttacaccccaagcagatggaacgaatttttatagtggcaccatcaaatttgaccatttatacaatctctaaaatattagagaaactttt 222  Q
    |||||||||| |||||||| ||||| || || | ||||| || |||||||||| ||  ||||||| || ||||||||||| ||||||||||| ||| |||    
T  15249868 acaaatcaaccttacaccc-aagcatattgagcaaatttgtagagtggcaccaccacctttgaccgttcatacaatctctgaaatattagagtaaccttt 15249770  T
Q  223 ttgtatgaaa 232  Q
    ||||||||||    
T  15249769 ttgtatgaaa 15249760  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 11896926 - 11896875
Alignment:
Q  181 tttgaccatttatacaatctctaaaatattagagaaacttttttgtatgaaa 232  Q
    |||||||||| ||||||||  ||||||||||||| ||| |||||||||||||    
T  11896926 tttgaccattcatacaatccataaaatattagagtaacatttttgtatgaaa 11896875  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 246
Target Start/End: Complemental strand, 18045884 - 18045705
Alignment:
Q  65 gtaaagtttgttttctttctaggtcaaaggtgactttaatggtcaatcaaacacccaaacaaatcaacgttacaccccaagcagatggaacgaattttta 164  Q
    |||| |||||||| |||||| || |||||| |||||| | |||||||| ||||||||||| ||||||| ||||| |||||  | || || | |||||       
T  18045884 gtaaggtttgtttcctttctggggcaaaggagactttgacggtcaatctaacacccaaactaatcaaccttaca-cccaattatatagagcaaatttccc 18045786  T
Q  165 tagtggcaccatcaaatttgaccatttatacaatctctaaaatattagagaaacttttttgtatgaaatgtcaacggtggaa 246  Q
     ||||| |||||||  ||||||| || ||||||||| ||||||||||||| |||  |||||||||||| | |||||||||||    
T  18045785 gagtgggaccatcacctttgaccgttcatacaatctataaaatattagagtaac-cttttgtatgaaaggccaacggtggaa 18045705  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 3221267 - 3221193
Alignment:
Q  65 gtaaagtttgttttctttctaggtcaaaggtgactttaatggtcaatcaaacacccaaacaaatcaacgttacac 139  Q
    ||||||||||||| || |||| | |||| | |||||| |||||||| | |||| |||||||||||||| ||||||    
T  3221267 gtaaagtttgtttgctctctaagacaaatgagactttgatggtcaacctaacatccaaacaaatcaaccttacac 3221193  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 32121615 - 32121681
Alignment:
Q  166 agtggcaccatcaaatttgaccatttatacaatctctaaaatattagagaaacttttttgtatgaaa 232  Q
    |||||||||||||  |||||||||| |||||||| |||||||||||||| ||| |||||||||||||    
T  32121615 agtggcaccatcacttttgaccattcatacaatcgctaaaatattagagtaacatttttgtatgaaa 32121681  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 34415002 - 34415049
Alignment:
Q  181 tttgaccatttatacaatctctaaaatattagagaaacttttttgtat 228  Q
    |||||||||| | ||||||||||||||||||||| ||| |||||||||    
T  34415002 tttgaccattcagacaatctctaaaatattagagtaacctttttgtat 34415049  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 4159547 - 4159625
Alignment:
Q  168 tggcaccatcaaatttgaccatttatacaatctctaaaatattagagaaacttttttgtatgaaatgtcaacggtggaa 246  Q
    |||||||||||   |||| | || ||||||||||||||||||||||| |||||||| || ||||| |||||||||||||    
T  4159547 tggcaccatcaccgttgatcgttcatacaatctctaaaatattagagtaactttttggtctgaaaggtcaacggtggaa 4159625  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 4143739 - 4143817
Alignment:
Q  168 tggcaccatcaaatttgaccatttatacaatctctaaaatattagagaaacttttttgtatgaaatgtcaacggtggaa 246  Q
    |||||||||||   |||| | || |||||||| |||||||||||||| ||| |||| |||||||| |||||||||||||    
T  4143739 tggcaccatcaccgttgatcgttcatacaatccctaaaatattagagtaaccttttggtatgaaaggtcaacggtggaa 4143817  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 17018183 - 17018243
Alignment:
Q  187 catttatacaatctctaaaatattagagaaacttttttgtatgaaatgtcaacggtggaaa 247  Q
    |||| ||||||||||||||||| || || ||  |||||||| |||| ||||||||||||||    
T  17018183 cattcatacaatctctaaaatagtatagtaaactttttgtaagaaaggtcaacggtggaaa 17018243  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 17548620 - 17548680
Alignment:
Q  187 catttatacaatctctaaaatattagagaaacttttttgtatgaaatgtcaacggtggaaa 247  Q
    |||| ||||||||||||||||| || || ||  |||||||| |||| ||||||||||||||    
T  17548620 cattcatacaatctctaaaatagtatagtaaactttttgtaagaaaggtcaacggtggaaa 17548680  T

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