View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9437_1 (Length: 407)
Name: NF9437_1
Description: NF9437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9437_1 |
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| [»] scaffold0225 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 397
Target Start/End: Complemental strand, 44894894 - 44894502
Alignment:
| Q |
10 |
accacgtcatgtccaccaggtagggatcgttttgcaacaacgggtccgtggagtttggaatgggtaaagagccaaaatcttgatattgttgaaggtaatt |
109 |
Q |
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| T |
44894894 |
accacgtcatgtccaccaggtagggatcgttttgcaacaacgggtccgtggagtttggaatgggtaaagagccaaaatcttgatattgttgaaggtaatt |
44894795 |
T |
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| Q |
110 |
tgccttccgc----catgtctcaattaattcttcttctacaagtggaccgtgtgttaatnnnnnnnnggtagtggctatctgcgtcatacgacgcaaagt |
205 |
Q |
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| T |
44894794 |
tgtcttccgcgaaacatgtctcaattaattcttcttctacaagtggatcgcatgttaataaaaaaaagatagtggctatctgcatcatacgacgcaaagt |
44894695 |
T |
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| Q |
206 |
atgaggcgtattgatcggctaccgacgaaagatcgtgaagatgttttacgtgctctaacaagaaatgttaaaaa-aggatgaggccgtgtggtgacactc |
304 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44894694 |
atgaggcgtattgctcggctaccgacgaaagatcgtgaagatgttttacgtgctctaacaagaaatgttaaaaagaggatgaggccgtgtggtgacactc |
44894595 |
T |
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| Q |
305 |
aggttcaagctatctcaaaagacaaagtggcacagcaaagtgtttctcagtcatctgttaataatgactgggagaattggttggtgcttcatg |
397 |
Q |
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| T |
44894594 |
aggttcaagctatctcaaaagacaaagtggcacaacaaagtgtttctcagtcatctgttaataatgactgggagaattggttggtgcttcatg |
44894502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 19157349 - 19157264
Alignment:
| Q |
191 |
catacgacgcaaagtatgaggcgtattgatcggctaccgacgaaagatcgtgaagatgttttacgtgctctaacaagaaatgttaa |
276 |
Q |
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| T |
19157349 |
catacggcgcaaagcatgaggcgtattgctagacttccggcaaaagatcgtgaagatgttctccgtgctctgaaaagaaatgttaa |
19157264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 8252386 - 8252332
Alignment:
| Q |
343 |
agtgtttctcagtcatctgttaataatgactgggagaattggttggtgcttcatg |
397 |
Q |
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| T |
8252386 |
agtgcttctcagtcgtcagttaataatgagtggcagaactggttggtgcttcatg |
8252332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 29549457 - 29549408
Alignment:
| Q |
348 |
ttctcagtcatctgttaataatgactgggagaattggttggtgcttcatg |
397 |
Q |
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| T |
29549457 |
ttctcaatcatctattaataatgactggtcgaattggttggttcttcatg |
29549408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 24733944 - 24733989
Alignment:
| Q |
352 |
cagtcatctgttaataatgactgggagaattggttggtgcttcatg |
397 |
Q |
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| T |
24733944 |
cagtcatctgttaataatgattggatgaattggttggttcttcatg |
24733989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0225 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0225
Description:
Target: scaffold0225; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 2726 - 2774
Alignment:
| Q |
349 |
tctcagtcatctgttaataatgactgggagaattggttggtgcttcatg |
397 |
Q |
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| T |
2726 |
tctcagtcgtctgttaataatgactggatgaattggttggctcttcatg |
2774 |
T |
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