View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9438_1 (Length: 910)

Name: NF9438_1
Description: NF9438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9438_1
NF9438_1
[»] chr6 (33 HSPs)
chr6 (427-741)||(27228478-27228792)
chr6 (32-346)||(27228812-27229126)
chr6 (788-888)||(27228335-27228434)
chr6 (32-163)||(28786039-28786172)
chr6 (32-163)||(28780900-28781033)
chr6 (32-144)||(27698787-27698900)
chr6 (49-163)||(26655750-26655866)
chr6 (49-163)||(26761721-26761837)
chr6 (35-217)||(27427899-27428082)
chr6 (32-140)||(27725138-27725248)
chr6 (32-143)||(27718672-27718785)
chr6 (32-139)||(28792184-28792293)
chr6 (32-163)||(27604998-27605137)
chr6 (32-141)||(27611295-27611406)
chr6 (32-163)||(26802199-26802336)
chr6 (613-741)||(27585538-27585662)
chr6 (63-161)||(26823609-26823709)
chr6 (40-134)||(31284078-31284174)
chr6 (40-163)||(27338366-27338484)
chr6 (40-163)||(27399106-27399224)
chr6 (684-741)||(26634738-26634795)
chr6 (684-741)||(26740704-26740761)
chr6 (684-741)||(27583294-27583351)
chr6 (49-114)||(27678758-27678823)
chr6 (684-741)||(27700500-27700557)
chr6 (684-740)||(27312488-27312544)
chr6 (684-741)||(27581784-27581841)
chr6 (700-741)||(27594029-27594070)
chr6 (697-741)||(27532569-27532613)
chr6 (32-66)||(26884023-26884057)
chr6 (684-741)||(26957941-26957998)
chr6 (684-741)||(27310849-27310906)
chr6 (698-739)||(28780780-28780821)
[»] scaffold0277 (5 HSPs)
scaffold0277 (32-163)||(13925-14058)
scaffold0277 (32-139)||(4964-5073)
scaffold0277 (698-741)||(5622-5665)
scaffold0277 (615-687)||(5553-5625)
scaffold0277 (698-739)||(14137-14178)
[»] scaffold0349 (3 HSPs)
scaffold0349 (32-144)||(14648-14761)
scaffold0349 (32-140)||(3715-3825)
scaffold0349 (32-143)||(8094-8207)
[»] scaffold0003 (1 HSPs)
scaffold0003 (35-217)||(59281-59464)
[»] chr4 (9 HSPs)
chr4 (35-217)||(17989333-17989516)
chr4 (35-217)||(18073473-18073656)
chr4 (32-137)||(18699680-18699787)
chr4 (32-163)||(18655757-18655888)
chr4 (32-163)||(18731784-18731915)
chr4 (32-163)||(18679847-18679978)
chr4 (524-678)||(18683677-18683829)
chr4 (578-677)||(18732062-18732161)
chr4 (32-99)||(18724365-18724432)
[»] scaffold1254 (1 HSPs)
scaffold1254 (32-163)||(210-336)
[»] scaffold0419 (1 HSPs)
scaffold0419 (32-163)||(7293-7419)
[»] chr1 (1 HSPs)
chr1 (32-111)||(28164642-28164721)
[»] chr8 (1 HSPs)
chr8 (33-92)||(29274064-29274123)


Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 427 - 741
Target Start/End: Complemental strand, 27228792 - 27228478
Alignment:
Q  427 ataacaatgtgctatttttcaaatgttggaaaaagaaaggttgagactaggtgatgatatttataacaaacagtttaatatatataaatttgctagctat 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228792 ataacaatgtgctatttttcaaatgttggaaaaagaaaggttgagactaggtgatgatatttataacaaacagtttaatatatataaatttgctagctat 27228693  T
Q  527 ttagttaacacataaaaaagctcattattctctctccaattttatgtctcatgtttttattctactattagtaggaccctatgctatttttggttctaca 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228692 ttagttaacacataaaaaagctcattattctctctccaattttatgtctcatgtttttattctactattagtaggaccctatgctatttttggttctaca 27228593  T
Q  627 cttataccaagtaggaaacttccttcccattttgtatttctgtaaagtaacccatctcatcacttttcctacatcctccttccatgtaatttctttaaag 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228592 cttataccaagtaggaaacttccttcccattttgtatttctgtaaagtaacccatctcatcacttttcctacatcctccttccatgtaatttctttaaag 27228493  T
Q  727 taatgtgaatgtctt 741  Q
    |||||||||||||||    
T  27228492 taatgtgaatgtctt 27228478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 32 - 346
Target Start/End: Complemental strand, 27229126 - 27228812
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcaga 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27229126 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtatagccatgagacttgagagaaattggatgaaaagagttttagaatgcaga 27229027  T
Q  132 atatgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaagga-aaaacttaaga-aaaaatgttctaggaaacttcctattgccgtgtgg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  27229026 atatgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaaggagaaaacttaagacaaaaatgttctatgaaacttcctattgccgtgtgg 27228927  T
Q  230 accattcaattgcttttattcttctgttacgtgtagtgttattcttctagtaatgcaatattctctttttctctttattttctcaatttttggctctaca 329  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228926 accattcaattgcttttattcttctgttacgtgta--gttattcttctagtaatgcaatattctctttttctctttattttctcaatttttggctctaca 27228829  T
Q  330 gtctaaacttttatcac 346  Q
    |||||||||||||||||    
T  27228828 gtctaaacttttatcac 27228812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 788 - 888
Target Start/End: Complemental strand, 27228434 - 27228335
Alignment:
Q  788 cttcagtatgaatggagagagacatataatgtgattgattggacctacaaaatcatatagcttaataacagtgaataaagggataagaaaaaagtgatga 887  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27228434 cttcagtatgaatggagagagacatataatgtgattgattggacctacaaaatcatatagcttaataacagtgaataaagggataa-aaaaaagtgatga 27228336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 32 - 163
Target Start/End: Complemental strand, 28786172 - 28786039
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||  |||||||||| ||||| ||    
T  28786172 ttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattca 28786073  T
Q  130 gaatatgaatgagtatgtttttgtggtatgtgat 163  Q
    |||||||||||||| |||||||||||| ||||||    
T  28786072 gaatatgaatgagtttgtttttgtggtctgtgat 28786039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 32 - 163
Target Start/End: Complemental strand, 28781033 - 28780900
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    ||||||||||||| || |||||||||||||||||||||||||| |||| || ||||||| | |||||||||||||||||  |||||||||| ||||| ||    
T  28781033 ttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattca 28780934  T
Q  130 gaatatgaatgagtatgtttttgtggtatgtgat 163  Q
    |||||||||||||| |||||||||||| ||||||    
T  28780933 gaatatgaatgagtttgtttttgtggtctgtgat 28780900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 27698787 - 27698900
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg-aaaagagttttagaatgcag 130  Q
    |||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||| |||||||||    
T  27698787 ttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaagagtttgagaatgcag 27698886  T
Q  131 aatatgaatgagta 144  Q
    ||||||||||||||    
T  27698887 aatatgaatgagta 27698900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 26655866 - 26655750
Alignment:
Q  49 aggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgcagaatatgaatgagtatg 146  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||  ||||||||||  |||||||||||||||||||||| |    
T  26655866 aggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaag 26655767  T
Q  147 tttttgtggtatgtgat 163  Q
    |||||||||| ||||||    
T  26655766 tttttgtggtctgtgat 26655750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 26761837 - 26761721
Alignment:
Q  49 aggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgcagaatatgaatgagtatg 146  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||  ||||||||||  |||||||||||||||||||||| |    
T  26761837 aggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaag 26761738  T
Q  147 tttttgtggtatgtgat 163  Q
    |||||||||| ||||||    
T  26761737 tttttgtggtctgtgat 26761721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 27427899 - 27428082
Alignment:
Q  35 gtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaata 134  Q
    |||| ||||| || ||||||||||||||||| || ||||| |||| || ||||||||| |||||||||||  ||||| |||||||| |||||||||||||    
T  27427899 gtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgagaagagtttgagaatgcagaata 27427998  T
Q  135 tgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaagga-aaaacttaaga--aaaaatgttctaggaaacttcct 217  Q
    |||||||| ||||||||||||  |||||| || |||||||| ||||||| |||||||  ||  ||||||| |||| ||||||||||    
T  27427999 tgaatgaggatgtttttgtgg--tgtgatgtgaaactttaagacaaggagaaaacttctgacgaaaaatggtctatgaaacttcct 27428082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 27725138 - 27725248
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||| |||||  |||||||||| ||||||||    
T  27725138 ttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgca 27725237  T
Q  130 gaatatgaatg 140  Q
    |||||||||||    
T  27725238 gaatatgaatg 27725248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 27718672 - 27718785
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    ||||||||||||||||  ||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||  |||||||||| ||||||||    
T  27718672 ttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaaagagtttgagaatgca 27718771  T
Q  130 gaatatgaatgagt 143  Q
    ||||||||||||||    
T  27718772 gaatatgaatgagt 27718785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 28792293 - 28792184
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||  |||||||||| ||||| ||    
T  28792293 ttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattca 28792194  T
Q  130 gaatatgaat 139  Q
    ||||||||||    
T  28792193 gaatatgaat 28792184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 27604998 - 27605137
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagagga------aggtgattgtattgccatgagacttgagagaaattggatgaaaa--gagttttag 123  Q
    ||||||||||||| || |||||||||||||||| |||||      |||| |||| || ||||||||| |||||||||||||||||||||  |||||| ||    
T  27604998 ttggtaagtgaatgcataggaaaatgaagaggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgag 27605097  T
Q  124 aatgcagaatatgaatgagtatgtttttgtggtatgtgat 163  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  27605098 aatgcagaatatgaatgagtaagtttttgtggtctgtgat 27605137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 27611295 - 27611406
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    |||||||||||||||| ||||||||||||| |||||||||| | |||| || ||||||| | |||||||||||||||||  |||||||||| ||||||||    
T  27611295 ttggtaagtgaatccataggaaaatgaagaagaagaggaagctaattgcatagccatgaaaattgagagaaattggatgaaaaaagagtttgagaatgca 27611394  T
Q  130 gaatatgaatga 141  Q
    ||||||||||||    
T  27611395 gaatatgaatga 27611406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 32 - 163
Target Start/End: Complemental strand, 26802336 - 26802199
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg------aaaagagttttagaa 125  Q
    |||||||||||||||| | |||||||||||||| |||||||| || || || ||||||| | ||| |||||||||||||      |||||||||| ||||    
T  26802336 ttggtaagtgaatccataagaaaatgaagaggatgaggaaggagactgcatagccatgaaaattgtgagaaattggatgaaaaaaaaaagagtttgagaa 26802237  T
Q  126 tgcagaatatgaatgagtatgtttttgtggtatgtgat 163  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  26802236 tgcagaatatgaatgagtaagtttttgtggtctgtgat 26802199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 613 - 741
Target Start/End: Original strand, 27585538 - 27585662
Alignment:
Q  613 tttttggttctacacttataccaagtaggaaacttccttcccattttgtatttctgtaaagtaacccatctcatcacttttcctacatcctccttccatg 712  Q
    |||||||||| |||||| || ||||| |||||||||||||||||||  ||| ||||||||||||| |     |||||||| |||||||| | |||| |||    
T  27585538 tttttggttcaacacttgtagcaagtgggaaacttccttcccatttcatatgtctgtaaagtaacac----tatcactttccctacatctttcttctatg 27585633  T
Q  713 taatttctttaaagtaatgtgaatgtctt 741  Q
    ||||||||| |||| ||||||||||||||    
T  27585634 taatttcttaaaagcaatgtgaatgtctt 27585662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 26823709 - 26823609
Alignment:
Q  63 gaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaa--aagagttttagaatgcagaatatgaatgagtatgtttttgtggtatgt 160  Q
    |||||||||| ||| || || ||||||||| ||||||||||||||| |||  |||||||| |||||||||||||||||||||||||||  |||||| |||    
T  26823709 gaagaggaagttgactgcatagccatgagaattgagagaaattggacgaagaaagagtttgagaatgcagaatatgaatgagtatgttactgtggtgtgt 26823610  T
Q  161 g 161  Q
    |    
T  26823609 g 26823609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 31284174 - 31284078
Alignment:
Q  40 tgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatga--aaagagttttagaatgcagaata 134  Q
    ||||| || |||||| ||||||||||||||||| |||||| || ||||||||| |||||||||  |||||||  ||||| ||| |||||||||||||    
T  31284174 tgaatacataggaaattgaagaggaagaggaagatgattgcatagccatgagatttgagagaatatggatgaagaaagaatttgagaatgcagaata 31284078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 27338366 - 27338484
Alignment:
Q  40 tgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaatatgaat 139  Q
    |||| ||| |||||| |||||||||||||||| ||||||| || ||||||||| |||||||||||  |||||||| |   || |     |||||||||||    
T  27338366 tgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttg-----agaatatgaat 27338460  T
Q  140 gagtatgtttttgtggtatgtgat 163  Q
    ||||| ||||||||||| ||||||    
T  27338461 gagtaagtttttgtggtctgtgat 27338484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 27399106 - 27399224
Alignment:
Q  40 tgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaatatgaat 139  Q
    |||| ||| |||||| |||||||||||||||| ||||||| || ||||||||| |||||||||||  |||||||| |   || |     |||||||||||    
T  27399106 tgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttg-----agaatatgaat 27399200  T
Q  140 gagtatgtttttgtggtatgtgat 163  Q
    ||||| ||||||||||| ||||||    
T  27399201 gagtaagtttttgtggtctgtgat 27399224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 741
Target Start/End: Complemental strand, 26634795 - 26634738
Alignment:
Q  684 catcacttttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 741  Q
    ||||||||||||||||| ||||| |||||| |||||| ||||| ||||||||||||||    
T  26634795 catcacttttcctacattctcctaccatgtcatttctataaagcaatgtgaatgtctt 26634738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 741
Target Start/End: Complemental strand, 26740761 - 26740704
Alignment:
Q  684 catcacttttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 741  Q
    ||||||||||||||||| ||||| |||||| |||||| ||||| ||||||||||||||    
T  26740761 catcacttttcctacattctcctaccatgtcatttctataaagcaatgtgaatgtctt 26740704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 741
Target Start/End: Original strand, 27583294 - 27583351
Alignment:
Q  684 catcacttttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 741  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| ||||| ||||||||    
T  27583294 catcacttttcctacatcctcctgccatgtaatttccataaagcaatgtaaatgtctt 27583351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 27678823 - 27678758
Alignment:
Q  49 aggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaa 114  Q
    |||||| ||||| |||||||||||||||||| || ||||||||| || ||||||||| ||||||||    
T  27678823 aggaaattgaagtggaagaggaaggtgattgcatagccatgagattttagagaaattagatgaaaa 27678758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 741
Target Start/End: Original strand, 27700500 - 27700557
Alignment:
Q  684 catcacttttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 741  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| ||||| ||||||||    
T  27700500 catcacttttcctacatcctcctgccatgtaatttccataaagcaatgtaaatgtctt 27700557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 684 - 740
Target Start/End: Original strand, 27312488 - 27312544
Alignment:
Q  684 catcacttttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtct 740  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| ||||| |||||||    
T  27312488 catcacttttcctacatcctcctgccatgtaatttccataaagcaatgtaaatgtct 27312544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 684 - 741
Target Start/End: Original strand, 27581784 - 27581841
Alignment:
Q  684 catcacttttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 741  Q
    |||||||||| |||| ||||| ||||||||||| ||| ||||| ||||||||||||||    
T  27581784 catcactttttctacctcctctttccatgtaatgtctgtaaagcaatgtgaatgtctt 27581841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 700 - 741
Target Start/End: Original strand, 27594029 - 27594070
Alignment:
Q  700 tcctccttccatgtaatttctttaaagtaatgtgaatgtctt 741  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  27594029 tccttcttccatgtaatttctttaaagcaatgtgaatgtctt 27594070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 697 - 741
Target Start/End: Original strand, 27532569 - 27532613
Alignment:
Q  697 acatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 741  Q
    ||||||| |||||||||||||||||||||| || |||||||||||    
T  27532569 acatccttcttccatgtaatttctttaaagcaacgtgaatgtctt 27532613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 26884057 - 26884023
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaag 66  Q
    |||||||||||||||| ||||||||||||||||||    
T  26884057 ttggtaagtgaatccataggaaaatgaagaggaag 26884023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 741
Target Start/End: Complemental strand, 26957998 - 26957941
Alignment:
Q  684 catcacttttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 741  Q
    |||||||||||||| |||||||| | |||| |||||| ||||| |||| |||||||||    
T  26957998 catcacttttcctaaatcctcctacaatgtcatttctataaagcaatgcgaatgtctt 26957941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 741
Target Start/End: Original strand, 27310849 - 27310906
Alignment:
Q  684 catcacttttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 741  Q
    |||||||||| |||| ||||| ||||||||||| ||| ||||| ||||||||| ||||    
T  27310849 catcactttttctacctcctctttccatgtaatgtctgtaaagcaatgtgaatatctt 27310906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 739
Target Start/End: Complemental strand, 28780821 - 28780780
Alignment:
Q  698 catcctccttccatgtaatttctttaaagtaatgtgaatgtc 739  Q
    |||||| |||||||||||||||||||||| ||| ||||||||    
T  28780821 catccttcttccatgtaatttctttaaagcaatatgaatgtc 28780780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 79; Significance: 2e-36; HSPs: 5)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 13925 - 14058
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    ||||||||||||| || |||||||||||||||||||||||||| |||| || ||||||| | |||||||||||||||||  |||||||||| ||||| ||    
T  13925 ttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattca 14024  T
Q  130 gaatatgaatgagtatgtttttgtggtatgtgat 163  Q
    |||||||||||||| |||||||||||| ||||||    
T  14025 gaatatgaatgagtttgtttttgtggtctgtgat 14058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 4964 - 5073
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||  |||||||||| ||||| ||    
T  4964 ttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattca 5063  T
Q  130 gaatatgaat 139  Q
    ||||||||||    
T  5064 gaatatgaat 5073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 741
Target Start/End: Original strand, 5622 - 5665
Alignment:
Q  698 catcctccttccatgtaatttctttaaagtaatgtgaatgtctt 741  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||    
T  5622 catccttcttccatgtaatttctttaaagcaatgtcaatgtctt 5665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 687
Target Start/End: Original strand, 5553 - 5625
Alignment:
Q  615 tttggttctacacttataccaagtaggaaacttccttcccattttgtat-ttctgtaaagtaacccatctcatc 687  Q
    ||||||| ||||||| |||||||| ||||||||||||| |||||  ||| |||||||||| || ||||||||||    
T  5553 tttggttttacacttttaccaagtgggaaacttccttctcatttcctatcttctgtaaagcaa-ccatctcatc 5625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 739
Target Start/End: Original strand, 14137 - 14178
Alignment:
Q  698 catcctccttccatgtaatttctttaaagtaatgtgaatgtc 739  Q
    |||||| |||||||||||||||||||||| ||| ||||||||    
T  14137 catccttcttccatgtaatttctttaaagcaatatgaatgtc 14178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 78; Significance: 7e-36; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 14648 - 14761
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg-aaaagagttttagaatgcag 130  Q
    |||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||| |||||||||    
T  14648 ttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaagagtttgagaatgcag 14747  T
Q  131 aatatgaatgagta 144  Q
    ||||||||||||||    
T  14748 aatatgaatgagta 14761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 3715 - 3825
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||| |||||  |||||||||| ||||||||    
T  3715 ttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgca 3814  T
Q  130 gaatatgaatg 140  Q
    |||||||||||    
T  3815 gaatatgaatg 3825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 8094 - 8207
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    ||||||||||||||||  ||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||  |||||||||| ||||||||    
T  8094 ttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaaagagtttgagaatgca 8193  T
Q  130 gaatatgaatgagt 143  Q
    ||||||||||||||    
T  8194 gaatatgaatgagt 8207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 59464 - 59281
Alignment:
Q  35 gtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaata 134  Q
    |||| ||||| || ||||||||||||||||| || ||||| |||| || ||||||||| |||||||||||  ||||| |||||||| |||||||||||||    
T  59464 gtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgagaagagtttgagaatgcagaata 59365  T
Q  135 tgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaagga-aaaacttaaga--aaaaatgttctaggaaacttcct 217  Q
    |||||||| ||||||||||||  |||||| || |||||||| ||||||| |||||||  ||  ||||||| |||| ||||||||||    
T  59364 tgaatgaggatgtttttgtgg--tgtgatgtgaaactttaagacaaggagaaaacttctgacgaaaaatggtctatgaaacttcct 59281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 3e-32; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 17989333 - 17989516
Alignment:
Q  35 gtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaata 134  Q
    |||| ||||| || ||||||||||||||||| || ||||| |||| || ||||||||| |||||||||||  ||||| |||||||| |||||||||||||    
T  17989333 gtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgagaagagtttgagaatgcagaata 17989432  T
Q  135 tgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaagga-aaaacttaaga--aaaaatgttctaggaaacttcct 217  Q
    |||||||| ||||||||||||  |||||| || |||||||| ||||||| |||||||  ||  ||||||| |||| ||||||||||    
T  17989433 tgaatgaggatgtttttgtgg--tgtgatgtgaaactttaagacaaggagaaaacttctgacgaaaaatggtctatgaaacttcct 17989516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 18073656 - 18073473
Alignment:
Q  35 gtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaata 134  Q
    |||| ||||| || ||||||||||||||||| || ||||| |||| || ||||||||| |||||||||||  ||||| |||||||| |||||||||||||    
T  18073656 gtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgagaagagtttgagaatgcagaata 18073557  T
Q  135 tgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaagga-aaaacttaaga--aaaaatgttctaggaaacttcct 217  Q
    |||||||| ||||||||||||  |||||| || |||||||| ||||||| |||||||  ||  ||||||| |||| ||||||||||    
T  18073556 tgaatgaggatgtttttgtgg--tgtgatgtgaaactttaagacaaggagaaaacttctgacgaaaaatggtctatgaaacttcct 18073473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 18699680 - 18699787
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    |||||||||||||| | |||||||||||||||| |||||||||||||| || ||||||||| |||||||||| | ||||  |||||||||| ||||||||    
T  18699680 ttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgagagaaactagatgaaaaaagagtttgagaatgca 18699779  T
Q  130 gaatatga 137  Q
    ||||||||    
T  18699780 gaatatga 18699787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 18655757 - 18655888
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||||  | ||||||| | |||||||||| ||||||  |||||||||| ||||||||    
T  18655757 ttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcctagccatgaaaattgagagaaactggatgaaaaaagagtttgagaatgca 18655856  T
Q  130 gaatatgaatgagtatgtttttgtggtatgtgat 163  Q
    ||||||||  |  || ||||||||||||||||||    
T  18655857 gaatatga--gtttaagtttttgtggtatgtgat 18655888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 18731784 - 18731915
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    |||||||||||||| | |||||||||||||||| |||||||||||||| || ||||||| | | |||||||| ||||||  |||||||||| ||||||||    
T  18731784 ttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgaaaatcgagagaaactggatgaaaaaagagtttgagaatgca 18731883  T
Q  130 gaatatgaatgagtatgtttttgtggtatgtgat 163  Q
    ||||||||  |  || ||||||||||||||||||    
T  18731884 gaatatga--gtttaagtttttgtggtatgtgat 18731915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 18679847 - 18679978
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca 129  Q
    |||||||||||||| | |||||||||||||| | |||||||||||||| || ||||||| | | |||||||| ||||||  |||||||||| ||||||||    
T  18679847 ttggtaagtgaatcgataggaaaatgaagagaatgaggaaggtgattgcatagccatgaaaatagagagaaactggatgaaaaaagagtttgagaatgca 18679946  T
Q  130 gaatatgaatgagtatgtttttgtggtatgtgat 163  Q
    ||||||||  |  || ||||||||||||||||||    
T  18679947 gaatatga--gtttaagtttttgtggtatgtgat 18679978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 524 - 678
Target Start/End: Original strand, 18683677 - 18683829
Alignment:
Q  524 tatttagttaacacataaaaaagctcattattctctctccaattttatgtctcatgtttttattctactattagtaggaccctatgctatttttggttct 623  Q
    |||||||| ||| |||||||||||| | ||||||||| ||||||| | |  ||| ||||| |||  ||||||||||| ||||| |  ||| |  ||||||    
T  18683677 tatttagtaaactcataaaaaagcttaatattctctccccaatttaacgattcaggttttcattgcactattagtagaaccctcttttatat--ggttct 18683774  T
Q  624 acacttataccaagtaggaaacttccttcccattttgtatttctgtaaagtaacc 678  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  18683775 acacttttaccaagtgggaaacttccttcccatttcgtatttctgcaaagtaacc 18683829  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 578 - 677
Target Start/End: Original strand, 18732062 - 18732161
Alignment:
Q  578 tgtttttattctactattagtaggaccctatgctatt-tttggttctacacttataccaagtaggaaacttccttcccattttgtatttctgtaaagtaa 676  Q
    |||||| ||| |||||||||||||||||| |||| || ||||||||||||||| |||||||| ||||| |||||| |||||| ||  |||||||||||||    
T  18732062 tgttttcattgtactattagtaggaccctctgcttttatttggttctacactt-taccaagtgggaaatttccttgccatttcgttcttctgtaaagtaa 18732160  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 18724365 - 18724432
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgaga 99  Q
    |||||||||||||| | |||||||||||||||| |||||||||||||| || ||||||||| ||||||    
T  18724365 ttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgaga 18724432  T

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Target: scaffold1254 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 210 - 336
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcaga 131  Q
    ||||||||||||| || | ||||||||||||||||||| ||||||||| || ||||||||| |||||||||||| |||||||| ||  || |     |||    
T  210 ttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttg-----aga 304  T
Q  132 atatgaatgagtatgtttttgtggtatgtgat 163  Q
    ||||||||||||| ||||||||||| ||||||    
T  305 atatgaatgagtaagtttttgtggtctgtgat 336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 32 - 163
Target Start/End: Complemental strand, 7419 - 7293
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcaga 131  Q
    ||||||||||||| || | ||||||||||||||||||| ||||||||| || ||||||||| |||||||||||| |||||||| ||  || |     |||    
T  7419 ttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttg-----aga 7325  T
Q  132 atatgaatgagtatgtttttgtggtatgtgat 163  Q
    ||||||||||||| ||||||||||| ||||||    
T  7324 atatgaatgagtaagtttttgtggtctgtgat 7293  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 28164642 - 28164721
Alignment:
Q  32 ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatga 111  Q
    |||||| ||||||||| |||||| |||||||||||||||| | ||| |||| ||||||||| |||| |||||||||||||    
T  28164642 ttggtatgtgaatccataggaaattgaagaggaagaggaatgcgatcgtatagccatgagaattgacagaaattggatga 28164721  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 29274064 - 29274123
Alignment:
Q  33 tggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgaga 92  Q
    ||||||||||||||| | || | |||||||||||||||||||||||| || |||||||||    
T  29274064 tggtaagtgaatccatatgagattgaagaggaagaggaaggtgattgcatagccatgaga 29274123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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