View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9438_2 (Length: 508)
Name: NF9438_2
Description: NF9438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9438_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 14 - 508
Target Start/End: Original strand, 52086637 - 52087131
Alignment:
| Q |
14 |
gaagaagtgttgtgttaaatgacaaacaagttgaagttggtggaaacaggggagttgaggaagaagaagaggaagagtcagtgttcaacgttactagtca |
113 |
Q |
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| T |
52086637 |
gaagaagtgttgtgttaaatgacaaacaagttgaagttggtggaaacaggggagttgaggaagaagaagaggaagagtcagtgttcaacgttactagtca |
52086736 |
T |
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| Q |
114 |
gttgttcttaaaaccaattgagaactgtaagaatcttgacaaagaagttgttctacgacgaattcgacaccgaaagaggatgaacaaagtacgagctgct |
213 |
Q |
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| T |
52086737 |
gttgttcttaaaaccaattgagaactgtaagaatcttgacaaagaagttgttctacgacgaattcgacaccgaaagaggatgaacaaagtacaagctgct |
52086836 |
T |
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| Q |
214 |
gttggagccatattcttaggctctagtgccaataatactgaaaatggcgacgcatctgttcaacataagagatgggtggatgatgcttttgctgcattgt |
313 |
Q |
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| T |
52086837 |
gttggagccatattcttaggctctagtgccaataatactggaaatggcgacgcatctgttcaacataagagatgggtggatgatgcttttgctgctttgt |
52086936 |
T |
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| Q |
314 |
aaattagtgctgtatgattttagttgattatccgtttatttgtatttatcaaagtaaccttttcttaataatattgttatgtttgggcatagtgtatata |
413 |
Q |
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| T |
52086937 |
aaattagtgctgtatgattttagttgattatccgtttatttgtatttatcaaagtaaccttttcttaataatattgttatgtttgggcatagtgtatata |
52087036 |
T |
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| Q |
414 |
tgtattttactgggaaattggaatagccggtgattttaaagaatttgttttggttgaagttttcttataaaaatgaaaaatggttacacacttat |
508 |
Q |
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| T |
52087037 |
tgtattttactgggaaattggaatagccggtgattttaaagaatttgttttggttgaagtttccttataaaaatgaaaaatggttacacacttat |
52087131 |
T |
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