View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9438_low_1 (Length: 442)
Name: NF9438_low_1
Description: NF9438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9438_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 148 - 425
Target Start/End: Complemental strand, 34836106 - 34835829
Alignment:
| Q |
148 |
gaatctaaaaatacagagattgatatgcaaatggttttaaatattttgattcaatgtattgattgcgtcgcaatccgaatacatatattttgattgctca |
247 |
Q |
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| T |
34836106 |
gaatctaaaaatacggagattgatatgcaaatggttttaaatattttgattcaatgtattgattgcgtcccaatccgaatacatatatattgattgttca |
34836007 |
T |
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| Q |
248 |
tgttaataattggtttcagattcttattggtccttctgattgggaagactactccaaaggaaatgaaggatctacaagatatagaatccataacctacca |
347 |
Q |
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| T |
34836006 |
tgttaataattggtttcagattcttattggtccttctgattgggaagactactccaaaggaaaggaaggatctacaagatatagaatccataacctacca |
34835907 |
T |
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| Q |
348 |
aaaaattctggacctggagtctatgagctcggagtagctgcatcgactagcgggttggggcgtgaaatttacaagctt |
425 |
Q |
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| T |
34835906 |
gaaaattctggacctggagtctatgagctcggagtagctgcatcgactagcgggttggggcgtgaaatttacaagctt |
34835829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 34836242 - 34836140
Alignment:
| Q |
12 |
tgttatgtgtgtaagattgaaaaatatcaaactaaagggctacgtaatagccgacaatttcacatattcacgctgtcaagacattgttggattgagatct |
111 |
Q |
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| T |
34836242 |
tgttatgtgtgtaagattgaaaaatatcaaactaaagggctacgtaatagctgacaatttcacatattcatgctgtcaagacattgttggattgagatct |
34836143 |
T |
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| Q |
112 |
gaa |
114 |
Q |
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| T |
34836142 |
gaa |
34836140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 328
Target Start/End: Original strand, 35335137 - 35335229
Alignment:
| Q |
236 |
tttgattgctcatgttaataattggtttcagattcttattggtccttctgattgggaagactactccaaaggaaatgaaggatctacaagata |
328 |
Q |
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| T |
35335137 |
tttggttgctcatgttataaactgttttcagattcttattggtccttctgattgggaagactattccaaagaaaaggaaggatctaccagata |
35335229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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