View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9438_low_3 (Length: 266)
Name: NF9438_low_3
Description: NF9438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9438_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 17380011 - 17379763
Alignment:
| Q |
1 |
ttcagagctcagttcagctagtagatggcctgtttgggcatctttgctgttgtataggcagatattagattctattgaagctaatgactacaataacttc |
100 |
Q |
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| T |
17380011 |
ttcagagctcagttcagctagtagatggcctgtttgggcatctttgctgttgtataggcagatattagattctattgaagctaatgactacaataacttc |
17379912 |
T |
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| Q |
101 |
actaaacgggcttatgtaggaaaagctaaaaagctcttatcacttcctgttgcttttggaatagcaacgtttggcccacagaagttagccaaaatgacta |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
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| T |
17379911 |
actaaacgggcttatgtaggaaaggctaaaaagctcttatcacttcctgttgcttttggaatagcaacttttggcccacaaaagttggccaaaatgacta |
17379812 |
T |
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| Q |
201 |
caagatgaacatgagattgtgctacaaaagcattgaatagtttggtatg |
249 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17379811 |
caagatgaacatgagattgagctacaaaagcattgaatagtttggtatg |
17379763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 39517117 - 39516993
Alignment:
| Q |
1 |
ttcagagctcagttcagctagtagatggcctgtttgggcatctttgctgttgtataggcagatattagattctattgaagctaatgactacaataacttc |
100 |
Q |
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||||||||||||||| ||||||||||||||||| |||||| | ||| |||| ||||||||||||||||||||||||||||| ||||| || ||||||||| |
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| T |
39517117 |
ttcagagctcagttctgctagtagatggcctgtatgggcagcattgttgttatataggcagatattagattctattgaagccaatgattataataacttc |
39517018 |
T |
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| Q |
101 |
actaaacgggcttatgtaggaaaag |
125 |
Q |
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|||||| |||||||||| ||||||| |
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| T |
39517017 |
actaaaagggcttatgtcggaaaag |
39516993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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