View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_high_12 (Length: 235)
Name: NF9439_high_12
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_high_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33968242 - 33968479
Alignment:
| Q |
1 |
tgatatatgaagctagtcaagctacccttcatgaagaagggaataaacccaaataacttgtgttaatnnnnnnnnn--gttagtcttaaaactagaaaca |
98 |
Q |
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| T |
33968242 |
tgatatctgaagctagtcgagctacccttcatgaagaagggaataaacccaaataacttgtgttaataaaaaaaaaaagttaatcttaaaactagaaaca |
33968341 |
T |
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| Q |
99 |
ttcatatactcacatttttttaatttgttgtggtatatgtatggcaggtgatgtgattaa--nnnnnnnnnnnnnnngtatattcttctcaaggtcaaat |
196 |
Q |
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| T |
33968342 |
t-catatactcacatttttttaatttgttgtggtatatgtatggcaggtgatgtgattaatttatatttttttttttgtatattcttctcgaggtcatat |
33968440 |
T |
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| Q |
197 |
atgttttattccgtataaaatctgagatattcgaagtat |
235 |
Q |
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| T |
33968441 |
atgttttattccgtataaaatctaagatattcgaagtat |
33968479 |
T |
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