View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_high_13 (Length: 219)
Name: NF9439_high_13
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 4817880 - 4817688
Alignment:
| Q |
19 |
agaaatgcattacaatttcgtattccttgacaaagtgttgtaggcattatttataatggtagtttacatctctaagtttctcaaactttcgatgtgggac |
118 |
Q |
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| T |
4817880 |
agaaatgcattacaattttatactctttaacaaattgttgtaggctttatttataatagtagtttacatctctaagtttctcaaactttcgatgtgggac |
4817781 |
T |
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| Q |
119 |
aaactatggctctataaatatgtagtgaccaagtcatcatcaatgaatgcatgtgttatatagatctgaattcttctatgatctctgcttctc |
211 |
Q |
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| T |
4817780 |
aaactatggctctataaatatgtagtgaccaagtaatcatcaatgaatgcatgtgttatatagatctgaattcatctatgatctttgtttctc |
4817688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 4798722 - 4798602
Alignment:
| Q |
19 |
agaaatgcattacaatttcgtattccttgacaaagtgttgtaggcattatttataatggtagtttacatctctaagtttctcaaactttcgatgtgggac |
118 |
Q |
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| T |
4798722 |
agaaatgcattacaattttgtattccataacaaagtgttgtaagctttatttataatggtagtttacatctctaagtttctcaaacttccgatgtgggac |
4798623 |
T |
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| Q |
119 |
aaactatggctctataaatat |
139 |
Q |
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| T |
4798622 |
aaactatggttctataaatat |
4798602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 4836208 - 4836115
Alignment:
| Q |
52 |
agtgttgtaggcattatttataatggtagtttacatctctaagtttctcaaactttcgatgtgggacaaactatggctctataaatatgtagtg |
145 |
Q |
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| T |
4836208 |
agtgttgtaggctttatttataatggcagtttacatctctatgtttttcaaactttcgatgtgggacaaactatggttctataaatatgtagtg |
4836115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 4836076 - 4836020
Alignment:
| Q |
146 |
accaagtcatcatcaatgaatgcatgtgttatatagatctgaattcttctatgatct |
202 |
Q |
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| T |
4836076 |
accaagtcatcatcaatgattgcatgtgttatatagatctcaattcttctatgatct |
4836020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 4804875 - 4804808
Alignment:
| Q |
53 |
gtgttgtaggcattatttataatggtagtttacatctctaagtttctcaaactttcgatgtgggacaa |
120 |
Q |
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| T |
4804875 |
gtgttgtaggctttatttataatgatagtttgcctctctaagattctcaaacatccgatgtgggacaa |
4804808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 4803595 - 4803556
Alignment:
| Q |
65 |
ttatttataatggtagtttacatctctaagtttctcaaac |
104 |
Q |
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| T |
4803595 |
ttatttataatggtagtttacatctctaagcttctcaaac |
4803556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 4798549 - 4798493
Alignment:
| Q |
158 |
tcaatgaatgcatgtgttat---atagatctgaattcttctatgatctctgcttctc |
211 |
Q |
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| T |
4798549 |
tcaatgaatgcatgtgttattatatagatctgaattcttctatgatctttgtttctc |
4798493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 10775243 - 10775175
Alignment:
| Q |
50 |
aaagtgttgtaggcattatttataatggtagtttacatctctaagtttctcaaactttcgatgtgggaca |
119 |
Q |
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| T |
10775243 |
aaagtgttgtaggcattatttataat-gtagtttgcctctctaagattgttaaacgtccgatgtgggaca |
10775175 |
T |
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