View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9439_high_2 (Length: 453)

Name: NF9439_high_2
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9439_high_2
NF9439_high_2
[»] chr7 (9 HSPs)
chr7 (90-313)||(42513062-42513285)
chr7 (90-240)||(30456307-30456456)
chr7 (166-313)||(38572287-38572434)
chr7 (90-240)||(30452702-30452847)
chr7 (100-212)||(11206499-11206611)
chr7 (89-269)||(41712265-41712443)
chr7 (101-265)||(49017102-49017266)
chr7 (100-214)||(6102928-6103043)
chr7 (319-352)||(38572462-38572495)
[»] chr3 (10 HSPs)
chr3 (90-290)||(36326442-36326640)
chr3 (151-313)||(30911982-30912144)
chr3 (139-311)||(55211737-55211905)
chr3 (100-186)||(14029381-14029467)
chr3 (159-313)||(32414663-32414821)
chr3 (137-226)||(33328218-33328306)
chr3 (90-129)||(30912146-30912185)
chr3 (104-146)||(32414847-32414889)
chr3 (319-352)||(30911921-30911954)
chr3 (318-354)||(55211934-55211970)
[»] chr6 (7 HSPs)
chr6 (88-313)||(4834644-4834871)
chr6 (90-313)||(7415566-7415789)
chr6 (90-297)||(7422590-7422797)
chr6 (90-310)||(7426516-7426736)
chr6 (90-313)||(33242776-33242998)
chr6 (90-192)||(13886589-13886691)
chr6 (243-313)||(13886515-13886585)
[»] chr5 (7 HSPs)
chr5 (89-313)||(8123455-8123679)
chr5 (100-313)||(671389-671602)
chr5 (355-449)||(4287473-4287567)
chr5 (89-217)||(41709523-41709651)
chr5 (90-240)||(24108697-24108848)
chr5 (17-63)||(4287571-4287617)
chr5 (90-170)||(10321869-10321949)
[»] chr1 (6 HSPs)
chr1 (90-313)||(18583886-18584109)
chr1 (90-240)||(23405475-23405625)
chr1 (90-180)||(21075941-21076031)
chr1 (250-313)||(13087634-13087696)
chr1 (100-180)||(9893803-9893883)
chr1 (100-217)||(13087701-13087817)
[»] chr8 (2 HSPs)
chr8 (90-231)||(44761976-44762117)
chr8 (90-231)||(44765283-44765424)
[»] chr4 (8 HSPs)
chr4 (90-240)||(27387620-27387770)
chr4 (90-222)||(55322334-55322467)
chr4 (200-313)||(20441029-20441141)
chr4 (90-231)||(36050673-36050813)
chr4 (90-231)||(36053932-36054072)
chr4 (100-214)||(24733642-24733756)
chr4 (317-352)||(36050519-36050554)
chr4 (317-352)||(36053778-36053813)
[»] chr2 (5 HSPs)
chr2 (198-313)||(31211616-31211731)
chr2 (90-194)||(31211859-31211963)
chr2 (106-240)||(45327420-45327554)
chr2 (100-173)||(31193244-31193317)
chr2 (90-127)||(40400909-40400946)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 7e-90; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 90 - 313
Target Start/End: Original strand, 42513062 - 42513285
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  42513062 tgatacgacccaattcgagtagggatcacactccagaaattagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 42513161  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 289  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||| | ||||||||||    
T  42513162 aataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagaccttctaga 42513261  T
Q  290 tccttctagactaaggtgagtcat 313  Q
    |||||||||| |||||||||||||    
T  42513262 tccttctagattaaggtgagtcat 42513285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 30456456 - 30456307
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaat 30456357  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 240  Q
     ||||  |||| ||||||||||||||||| |||||||||||||||| ||||    
T  30456356 cataaggcatataatgcttatatagactt-tgcatactcataataagataa 30456307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 166 - 313
Target Start/End: Original strand, 38572287 - 38572434
Alignment:
Q  166 attatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatca 265  Q
    |||||||| || ||| |||||||||||||  ||||||||| ||||||||||||| ||||| ||||||||| ||||||| |||| ||| |||||||||| |    
T  38572287 attatattttttattaattctcataataaggcatacaatgtttatatagacttgggcatattcataataagataagtgtaccctaacttactcaatatta 38572386  T
Q  266 tcccctaacaagataccttctagatccttctagactaaggtgagtcat 313  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  38572387 tcccctaacaagataccttctagatccttttagattaaggtgagtcat 38572434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 30452847 - 30452702
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||    
T  30452847 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaat 30452748  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 240  Q
     ||||  |||||||    ||||||||||| |||||||||||||||| ||||    
T  30452747 cataaggcatacaa----tatatagactt-tgcatactcataataagataa 30452702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 11206611 - 11206499
Alignment:
Q  100 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacat 199  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||    
T  11206611 caattcgagtagagatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcataataaggcat 11206512  T
Q  200 acaatgcttatat 212  Q
    |||||| ||||||    
T  11206511 acaatgtttatat 11206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 89 - 269
Target Start/End: Complemental strand, 41712443 - 41712265
Alignment:
Q  89 ttgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctc 187  Q
    |||||||||  ||||||||||| ||||||||||||| || || |||| || |||||||||| || |||||| |||||  |||| ||  ||||||||||||    
T  41712443 ttgatacgacccaattcgagtaaggatcacactccaaaaattaagagaga-aaactagagacaaaagaaaggaaatttgttatttt--tcattcattctc 41712347  T
Q  188 ataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatccc 269  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||| |||||    
T  41712346 ataataagacatacaatacttatatagacttgtgcctactcataataaaataagtgcaccctaacatacttaatattatccc 41712265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 265
Target Start/End: Complemental strand, 49017266 - 49017102
Alignment:
Q  101 aattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacata 200  Q
    ||||||| |||||||||||||||| || | |||| ||||||||||||| || |||||||||||  |||||||| |||||| | |||||||||||  ||||    
T  49017266 aattcgaatagggatcacactccataaattagagagagaaactagagataaaagaaagaaaatatattatatttttcattaagtctcataataaggcata 49017167  T
Q  201 caatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatca 265  Q
    ||||||||||| | ||||||| ||| ||||||||| ||||||||| |  ||||||||||||||||    
T  49017166 caatgcttatacaaacttgtggatagtcataataagataagtgcatcataacatactcaatatca 49017102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 6103043 - 6102928
Alignment:
Q  100 caattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagag-aaagaaaattcattatattattcattcattctcataataaaac 197  Q
    ||||||||||||| ||||||||||| || || |||| || |||||||||| || || ||| ||||||||||||||| |||||| ||||| || || |||     
T  6103043 caattcgagtaggaatcacactccataaattaagagaga-aaactagagataaaagcaaaaaaaattcattatatttttcattgattctaatcatgaaag 6102945  T
Q  198 atacaatgcttatatag 214  Q
    |||||||||||||||||    
T  6102944 atacaatgcttatatag 6102928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 38572462 - 38572495
Alignment:
Q  319 cacattagtactcattattctaaatatcctatca 352  Q
    ||||||||||||||||||||||||||| ||||||    
T  38572462 cacattagtactcattattctaaatatactatca 38572495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 90 - 290
Target Start/End: Complemental strand, 36326640 - 36326442
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 36326541  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 289  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36326540 aataaagcatacaatgcttatatagact--tgcatactcataataacctaagtgcaccctaacatactcaatatcatcccctaacaagataccttctaga 36326443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 151 - 313
Target Start/End: Complemental strand, 30912144 - 30911982
Alignment:
Q  151 agagaaagaaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcacccca 250  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  |||||||| |||||||||||||||||||||||| ||||| |||||||||||| |    
T  30912144 agagaaagaaaattcattatatttttcattgattctcataataaggcatacaatacttatatagacttgtgcatactcacaataaaataagtgcacccta 30912045  T
Q  251 acatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 313  Q
    ||||||||||||| ||||||||||||||||  || |||||||||||||| |||||||||||||    
T  30912044 acatactcaatattatcccctaacaagatatattttagatccttctagattaaggtgagtcat 30911982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 139 - 311
Target Start/End: Original strand, 55211737 - 55211905
Alignment:
Q  139 aaactagagaaaagagaaaga-aaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataaca 237  Q
    |||||||||| |||||| | | |||||||||||||| |||||| |||||||||||||  |||||||     ||||||||||||||||| ||||||||| |    
T  55211737 aaactagagataagagagaaataaattcattatatttttcattgattctcataataaggcatacaa-----atatagacttgtgcatattcataataaga 55211831  T
Q  238 taagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 311  Q
    ||||||||||| |||||||||||||| |||||||| ||| ||||||| | ||||||| |||| |||| ||||||    
T  55211832 taagtgcaccctaacatactcaatattatcccctaccaatataccttatggatccttttagattaagatgagtc 55211905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 14029467 - 14029381
Alignment:
Q  100 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattct 186  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||| |||||||||||||| |||||| |||||    
T  14029467 caattcgagtagggatcacactccagaatttagagtgagaaactagagataaaagaaaggaaattcattatatttttcattgattct 14029381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 159 - 313
Target Start/End: Complemental strand, 32414821 - 32414663
Alignment:
Q  159 aaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgt----gcatactcataataacataagtgcaccccaacat 254  Q
    |||| |||||||||| || ||| |||||| ||||||  ||||||||| ||||||||||||||    ||| ||||| ||||| |||||||||||  |||||    
T  32414821 aaaaatcattatattttttattgattctcgtaataaggcatacaatgtttatatagacttgtttgtgcaaactcaaaataagataagtgcaccataacat 32414722  T
Q  255 actcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 313  Q
    ||| ||||| ||||||  |||| ||||||||||||||||| |||  |||||||||||||    
T  32414721 acttaatattatccccagacaatataccttctagatccttataggttaaggtgagtcat 32414663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 33328306 - 33328218
Alignment:
Q  137 agaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatac 226  Q
    |||||||| |||||| |||||| ||||| |||||||  ||||||  |||| || ||||| ||||||||||||||| |||||| |||||||    
T  33328306 agaaacta-agaaaaaagaaaggaaattgattatatctttcattggttctaattataaagcatacaatgcttatacagacttatgcatac 33328218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 30912185 - 30912146
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaatt 129  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  30912185 tgatacgactcaattcgagtacggatcacactccagaatt 30912146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 32414889 - 32414847
Alignment:
Q  104 tcgagtagggatcacactccagaattcagagggagaaactaga 146  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32414889 tcgagtagggatcacactccaaaatttagagagagaaactaga 32414847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 30911954 - 30911921
Alignment:
Q  319 cacattagtactcattattctaaatatcctatca 352  Q
    ||||||||||||||||||||||| ||||||||||    
T  30911954 cacattagtactcattattctaagtatcctatca 30911921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 55211934 - 55211970
Alignment:
Q  318 ccacattagtactcattattctaaatatcctatcagt 354  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  55211934 ccacattagtgctccttattctaaatatcctatcagt 55211970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 88 - 313
Target Start/End: Complemental strand, 4834871 - 4834644
Alignment:
Q  88 gttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctc 187  Q
    ||||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||     
T  4834871 gttgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattcta 4834772  T
Q  188 ataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagata--ccttc 285  Q
    ||||| |  |||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||  ||||     
T  4834771 ataatgaggcatacaatgcttatatagacttatgcatactcataataagataagtgcaccctaacatactcaatattatcccctaataagatactccttt 4834672  T
Q  286 tagatccttctagactaaggtgagtcat 313  Q
    |||||||||||||| |||||||||||||    
T  4834671 tagatccttctagattaaggtgagtcat 4834644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 90 - 313
Target Start/End: Complemental strand, 7415789 - 7415566
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||| ||| | |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7415789 tgatacgatccaacttgagtagggatcacactccagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 7415690  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 289  Q
    |||||  |||||||||||||||||||||| ||  |||||||||||| |||||||||||  |||||||||||||| ||||||||||||||||  |||||||    
T  7415689 aataaggcatacaatgcttatatagacttatgtgtactcataataagataagtgcaccataacatactcaatattatcccctaacaagataatttctaga 7415590  T
Q  290 tccttctagactaaggtgagtcat 313  Q
    |||||||| | |||| ||||||||    
T  7415589 tccttctaaattaagatgagtcat 7415566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 90 - 297
Target Start/End: Complemental strand, 7422797 - 7422590
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  ||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7422797 tgatacgacccaattcgagtagggatcacactcaagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 7422698  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 289  Q
    |||||  |||||||||||||||||||||| ||  ||||| |||||| |||||||||||  |||||||||||| | |||||||||||||||| ||||||||    
T  7422697 aataaggcatacaatgcttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatgttatcccctaacaagataacttctaga 7422598  T
Q  290 tccttcta 297  Q
    ||||||||    
T  7422597 tccttcta 7422590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 90 - 310
Target Start/End: Complemental strand, 7426736 - 7426516
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  |||||||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaattagaaagagaaattagagaaaagagaaagaaaattcattatatttttcattgattctcat 7426637  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 289  Q
    |||||  ||||||||| |||||||||||| ||  ||||| |||||| |||||||||||  |||||||||||||| |||||||||||||||| ||||||||    
T  7426636 aataaggcatacaatgtttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatattatcccctaacaagataacttctaga 7426537  T
Q  290 tccttctagactaaggtgagt 310  Q
    |||| ||||| |||| |||||    
T  7426536 tcctactagattaagatgagt 7426516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 90 - 313
Target Start/End: Complemental strand, 33242998 - 33242776
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  |||||||||||| ||||||||||||||| | |||| ||||||||||| | || |||||  |||||||||||||| |||||| ||||||||    
T  33242998 tgatacgacccaattcgagtagagatcacactccagaaattagagagagaaactagaaataaaagaaaagaaattcattatatttttcattgattctcat 33242899  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 289  Q
    |||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||| ||  |||||| |    
T  33242898 aataaggcatacaatgcttatatagacttgtgcatactcataataagataagtgca-cctaacatactcaatattatcccctaacaatatgtcttctaaa 33242800  T
Q  290 tccttctagactaaggtgagtcat 313  Q
    ||||| ||||||||| ||| ||||    
T  33242799 tccttatagactaagatgactcat 33242776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 13886691 - 13886589
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  13886691 tgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctaat 13886592  T
Q  190 aat 192  Q
    |||    
T  13886591 aat 13886589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 13886585 - 13886515
Alignment:
Q  243 gcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 313  Q
    |||||| |||||||| ||||| | ||| |||||| ||||||| |||||| ||||||| |||||||||||||    
T  13886585 gcaccctaacatacttaatattaccccttaacaatataccttttagatctttctagattaaggtgagtcat 13886515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 89 - 313
Target Start/End: Complemental strand, 8123679 - 8123455
Alignment:
Q  89 ttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 188  Q
    |||||||||  ||||||||||| |||||||||| ||||| | ||||||||||| || |||||||||||||||||||||||||||| |||||| |||||||    
T  8123679 ttgatacgacccaattcgagtatggatcacacttcagaaattagagggagaaattaaagaaaagagaaagaaaattcattatatttttcattgattctca 8123580  T
Q  189 taataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctag 288  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||| | | |||||||    
T  8123579 taataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagatcttctag 8123480  T
Q  289 atccttctagactaaggtgagtcat 313  Q
    ||||||||||| |||||| ||||||    
T  8123479 atccttctagattaaggtcagtcat 8123455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 100 - 313
Target Start/End: Complemental strand, 671602 - 671389
Alignment:
Q  100 caattcgagtagggatcacactccagaattcagagggagaaa-ctagagaaaagagaaagaaaattcattatattattcattcattctcataataaaaca 198  Q
    |||||||||| ||||||||||| ||||| | | || |||||| ||||||| || ||||||||||||||||||||| |||||| |||||||||||||  ||    
T  671602 caattcgagttgggatcacacttcagaaatta-agagagaaagctagagataaaagaaagaaaattcattatatttttcattaattctcataataaggca 671504  T
Q  199 tacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctag 298  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||| |||| ||| |||||||||| |||||||||||| ||| ||| | |||||||||||    
T  671503 tacaatgattatataaacttgtgcatactcataataagataagtgtaccctaacctactcaatattatcccctaacaatatatcttatggatccttctag 671404  T
Q  299 actaaggtgagtcat 313  Q
    | |||||||||||||    
T  671403 attaaggtgagtcat 671389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 355 - 449
Target Start/End: Complemental strand, 4287567 - 4287473
Alignment:
Q  355 agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactaatcttctccaaatatttccggaaaacaatt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4287567 agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactattcttctccaaatatttccggaaaacaatt 4287473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 41709651 - 41709523
Alignment:
Q  89 ttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 188  Q
    |||||||||  |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  41709651 ttgatacgacccaattcgagtagagatcacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattctca 41709552  T
Q  189 taataaaacatacaatgcttatatagact 217  Q
    ||||||  ||||||||| |||||||||||    
T  41709551 taataaggcatacaatgtttatatagact 41709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 24108848 - 24108697
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaa-ctagagaaaagagaaagaaaattcattatattattcattcattctca 188  Q
    ||||||||  |||||||||||||||||||||||||||| | | ||| ||||| ||||||| ||   |||| |||||||||||||| ||||||  |||| |    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaatta-aggaagaaaactagagacaaacaaaaggaaattcattatatttttcattggttctaa 24108750  T
Q  189 taataaaacatacaatgcttatatagacttg-tgcatactcataataacataa 240  Q
    | |||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  24108749 tcataagacatacaatgcttatatagacttgttgcatactcataataaaataa 24108697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 4287617 - 4287571
Alignment:
Q  17 agcacagagagatgacaaaacagaagaatatagttttagggagcaag 63  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  4287617 agcacagagagatgacaaaacagaagaatttagttttagggagcaag 4287571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 10321869 - 10321949
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattat 170  Q
    ||||||||  ||||| ||||||||||||||||||| |||| |||| || || ||||||| ||||||||| |||||||||||    
T  10321869 tgatacgacccaatttgagtagggatcacactccataatttagagagataagctagagataagagaaaggaaattcattat 10321949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 90 - 313
Target Start/End: Original strand, 18583886 - 18584109
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 188  Q
    ||||||||  |||||||||||| ||| ||||||||||| || |||| || |||||||||| || |||||| ||||||| |||||| |||||| |||||||    
T  18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagaga-aaactagagataaaagaaaggaaattcagtatatttttcattgattctca 18583984  T
Q  189 taataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctag 288  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||  |||| ||||||| |||||||||||||| ||||||||| || ||||||| |||    
T  18583985 taataaagcatacaatgcttatatagacttgtgcatacttataatacgataactgcaccctaacatactcaatattatcccctaataatataccttttag 18584084  T
Q  289 atccttctagactaaggtgagtcat 313  Q
    ||||||||||| |||||||||||||    
T  18584085 atccttctagattaaggtgagtcat 18584109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 23405475 - 23405625
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  23405475 tgatacgacccaattcaagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 23405574  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 240  Q
    |||||  ||||||||| ||| |||||||||||||||| |||| ||| ||||    
T  23405575 aataaggcatacaatgtttagatagacttgtgcatacacatagtaagataa 23405625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 21075941 - 21076031
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcatt 180  Q
    |||||||||  ||||||||||||||| ||||||||||||| || | ||||||||| ||| || |||||| ||||||| |||||| ||||||    
T  21075941 tgatacgatcaaattcgagtagggatgacactccagaatttagcgagagaaactacagataaaagaaaggaaattcactatatttttcatt 21076031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 13087696 - 13087634
Alignment:
Q  250 aacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 313  Q
    ||||||||| |||| |||||||||||| ||||||||||||| | |||||| |||||||||||||    
T  13087696 aacatactcgatattatcccctaacaatataccttctagat-cgtctagattaaggtgagtcat 13087634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 9893883 - 9893803
Alignment:
Q  100 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcatt 180  Q
    ||||| ||||||| |||||||| || |||| || |  ||||||||||||  | ||||||||||||||||||||| ||||||    
T  9893883 caatttgagtaggtatcacactgcataatttagtgaaagaaactagagatgaaagaaagaaaattcattatatttttcatt 9893803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 13087817 - 13087701
Alignment:
Q  100 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattatt-cattcattctcataataaaaca 198  Q
    |||||||| |||| ||||||||||||||||  ||| |||    || ||| || |||||  ||||||||| |||| || ||||||||||||||||||  ||    
T  13087817 caattcgaataggtatcacactccagaatttcgagagaggt--taaagataaaagaaaataaattcattgtattttttcattcattctcataataaggca 13087720  T
Q  199 tacaatgcttatatagact 217  Q
    |||||| ||||||||||||    
T  13087719 tacaatacttatatagact 13087701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 44762117 - 44761976
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||| ||| ||||    
T  44762117 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactatagaaaagagaaaaaaaattcattatatttttcattgattttcat 44762018  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcata 231  Q
    |||||  ||||||||| |||||||||||||||||||| ||||    
T  44762017 aataaggcatacaatgtttatatagacttgtgcatacacata 44761976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 44765424 - 44765283
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattttcat 44765325  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcata 231  Q
    |||||   |||||||| |||||||||||||||||||| ||||    
T  44765324 aataaggaatacaatgtttatatagacttgtgcatacacata 44765283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 27387770 - 27387620
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 189  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||  |  ||||  |||||||||||||| ||||||| | || ||    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagatgaaggaaaagaaattcattatatttttcattcctgctaat 27387671  T
Q  190 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 240  Q
    ||| |  |||||||||||||||||||||||||||| ||| |||||| ||||    
T  27387670 aatgaggcatacaatgcttatatagacttgtgcatcctcgtaataagataa 27387620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 55322334 - 55322467
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcatta-tattattcattcattctca 188  Q
    ||||||||  |||||||||||||||||||||||||||||| ||| | |||| ||||||| || |||||| |||||||||| |||| ||||||||| || |    
T  55322334 tgatacgacccaattcgagtagggatcacactccagaatttagaagtagaagctagagataaaagaaaggaaattcattattatttttcattcatcctaa 55322433  T
Q  189 taataaaacatacaatgcttatatagacttgtgc 222  Q
    |||| |  ||||||||||||||||||||||||||    
T  55322434 taatgaggcatacaatgcttatatagacttgtgc 55322467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 200 - 313
Target Start/End: Original strand, 20441029 - 20441141
Alignment:
Q  200 acaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctaga 299  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||  |||| |||||||| ||||| |||||| |||| || ||||| |||||| |    
T  20441029 acaatgcttgtacagacttgtgcatactcataataagataagtgcaccctgacatgctcaatattatcccttaacaatatactttttagat-cttctaaa 20441127  T
Q  300 ctaaggtgagtcat 313  Q
     |||||||||||||    
T  20441128 ttaaggtgagtcat 20441141  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 36050813 - 36050673
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 188  Q
    ||||||||  ||||||||||||||||||||||||| || || | || || |||||||||| || |||||  |||||||||||||| ||||||    ||||    
T  36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagaga-aaactagagataaaagaaaagaaattcattatatttttcatttcc-ctca 36050716  T
Q  189 taataaaacatacaatgcttatatagacttgtgcatactcata 231  Q
    ||||||  ||||||||| |||||||||||||||||||| ||||    
T  36050715 taataaggcatacaatgtttatatagacttgtgcatacacata 36050673  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 36054072 - 36053932
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 188  Q
    ||||||||  ||||||||||||||||||||||||| || || | || || |||||||||| || |||||  |||||||||||||| ||||||    ||||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagaga-aaactagagataaaagaaaagaaattcattatatttttcatttcc-ctca 36053975  T
Q  189 taataaaacatacaatgcttatatagacttgtgcatactcata 231  Q
    ||||||  ||||||||| |||||||||||||||||||| ||||    
T  36053974 taataaggcatacaatgtttatatagacttgtgcatacacata 36053932  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 24733756 - 24733642
Alignment:
Q  100 caattcgagtagggatcacactccaga-attcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaaca 198  Q
    |||||| |||||||||||||||  ||| ||| |||| || |||||||| | || |||||| |||||||||||||| ||||||| |||| || || |||||    
T  24733756 caattcaagtagggatcacactttagatattaagagaga-aaactagatataaaagaaaggaaattcattatatttttcattccttctaatcatgaaaca 24733658  T
Q  199 tacaatgcttatatag 214  Q
    ||||||||||||||||    
T  24733657 tacaatgcttatatag 24733642  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 352
Target Start/End: Complemental strand, 36050554 - 36050519
Alignment:
Q  317 accacattagtactcattattctaaatatcctatca 352  Q
    ||||||||||||||||||||||||||||||||||||    
T  36050554 accacattagtactcattattctaaatatcctatca 36050519  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 352
Target Start/End: Complemental strand, 36053813 - 36053778
Alignment:
Q  317 accacattagtactcattattctaaatatcctatca 352  Q
    ||||||||||||||||||||||||||||||||||||    
T  36053813 accacattagtactcattattctaaatatcctatca 36053778  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 31211731 - 31211616
Alignment:
Q  198 atacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttcta 297  Q
    ||||||| ||||||||||||| |||||||||||| ||| |||||||||| | |||||||||||||| |||||||||||| ||| |||||| |||||||||    
T  31211731 atacaatacttatatagacttatgcatactcatattaagataagtgcactctaacatactcaatattatcccctaacaatatatcttctaaatccttcta 31211632  T
Q  298 gactaaggtgagtcat 313  Q
    || ||| |||||||||    
T  31211631 gattaaagtgagtcat 31211616  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 31211963 - 31211859
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 188  Q
    ||||||||| |||||||||||||||||||||||||||| || |||| || |||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  31211963 tgatacgatccaattcgagtagggatcacactccagaaattaagagaga-aaactagagataaaagaaagaaaattcattatatttttcattgattctca 31211865  T
Q  189 taataa 194  Q
    ||||||    
T  31211864 taataa 31211859  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 45327420 - 45327554
Alignment:
Q  106 gagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacatacaat 204  Q
    |||||||||||||||||||||| || |||| || ||| |||||| || |||||  ||||| |||||||| ||||||  |||||||||||| |||||||||    
T  45327420 gagtagggatcacactccagaaattaagagaga-aaattagagataaaagaaaagaaatttattatatttttcattttttctcataataagacatacaat 45327518  T
Q  205 gcttatatagacttgtgcatactcataataacataa 240  Q
    |||||||||||||||||||||| |||| ||| ||||    
T  45327519 gcttatatagacttgtgcatacacatagtaagataa 45327554  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 31193317 - 31193244
Alignment:
Q  100 caattcgagtagggatcacactccag-aattcagagggagaaactagagaaaagagaaagaaaattcattatatt 173  Q
    ||||||||||||||||||||||| || |||| |||| || ||||||||||  | |||||||||||| ||||||||    
T  31193317 caattcgagtagggatcacactctagaaattaagagaga-aaactagagatgaaagaaagaaaatttattatatt 31193244  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 40400909 - 40400946
Alignment:
Q  90 tgatacgattcaattcgagtagggatcacactccagaa 127  Q
    ||||| || |||||||||||||||||||||||||||||    
T  40400909 tgatatgactcaattcgagtagggatcacactccagaa 40400946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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