View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9439_low_1 (Length: 785)

Name: NF9439_low_1
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9439_low_1
NF9439_low_1
[»] chr4 (6 HSPs)
chr4 (414-603)||(19178690-19178877)
chr4 (191-392)||(19178413-19178614)
chr4 (1-129)||(43128990-43129118)
chr4 (301-379)||(46557223-46557301)
chr4 (191-270)||(43129218-43129291)
chr4 (429-522)||(3066924-3067017)
[»] chr3 (3 HSPs)
chr3 (423-502)||(1691648-1691727)
chr3 (438-522)||(1690754-1690838)
chr3 (454-517)||(24693794-24693857)
[»] chr5 (2 HSPs)
chr5 (424-522)||(1277799-1277898)
chr5 (321-388)||(43273537-43273604)
[»] chr8 (2 HSPs)
chr8 (451-522)||(16219826-16219897)
chr8 (424-522)||(16222511-16222611)
[»] chr2 (2 HSPs)
chr2 (424-522)||(12172419-12172518)
chr2 (447-516)||(12173401-12173470)
[»] chr7 (1 HSPs)
chr7 (322-379)||(10087906-10087963)
[»] chr1 (4 HSPs)
chr1 (319-363)||(8875288-8875332)
chr1 (328-379)||(9853667-9853718)
chr1 (424-490)||(45428574-45428641)
chr1 (452-485)||(45427551-45427584)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 1e-77; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 414 - 603
Target Start/End: Original strand, 19178690 - 19178877
Alignment:
Q  414 aacaattttcttttataaaacatgttttt-gattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcat 512  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19178690 aacaattttcttttataaaacatgttttttgattcccttatttaaaaagtcaacaaattttttggtccccctcccc-tcagaatgatgtggcaggctcat 19178788  T
Q  513 taatgccatgtaaacgtgctacttttgacggaatagatttatgccaagcccttatcaatgatggatttggcgagacaattactcccgtcat 603  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  19178789 taatgccatgtaagcgtgcta--tttgacggaatagatttatgccaagcccttgccaatgatggatttggcgagacaattactcctgtcat 19178877  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 191 - 392
Target Start/End: Original strand, 19178413 - 19178614
Alignment:
Q  191 atgcaaattaacctgaagagggaaatcaattatggtacacttactaataataatagataatgattatttcattatgctat-------ttgggggaccgga 283  Q
    |||||||||||| |||||||||||||||||||||||| |||       ||||||| ||||||||||||||||||||||||       |||||||||||||    
T  19178413 atgcaaattaacgtgaagagggaaatcaattatggtatact-------aataatacataatgattatttcattatgctatgcttaatttgggggaccgga 19178505  T
Q  284 atggtgcactcttgcccattatgatggaaattttgaggtttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaactatcgt 383  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||    
T  19178506 atggtgcactcttgcccattatgatggaaaatttgaggtttgaagctccgcagctgttaaccgccaatggaaaataaccacatcggtagttaactatcgt 19178605  T
Q  384 cggttactc 392  Q
    |||||||||    
T  19178606 cggttactc 19178614  T

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Target: chr4; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 43128990 - 43129118
Alignment:
Q  1 actctactgtttatatgagacagagtcaaaatataaagattcatggtgccaagcaatatatcaaatgtgatgatgtttgaattacgtaggcaaaatatta 100  Q
    |||||||||||||||||| ||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43128990 actctactgtttatatgaaacagagtcaaaatataaagatccttggtgacaaccaatatatcaaatgtgatgatgtttgaattacgtaggcaaaatatta 43129089  T
Q  101 agtttaatgcaattgtcttgagaaggctt 129  Q
    |||| |||||||||| |||||||||||||    
T  43129090 agttaaatgcaattgccttgagaaggctt 43129118  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 46557223 - 46557301
Alignment:
Q  301 attatgatggaaattttgaggtttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaacta 379  Q
    ||||||||||||| ||| |||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||||    
T  46557223 attatgatggaaaatttcaggtttgaagctccgcggcaattaactgccgatgaaaaataaccacatcggtagttaacta 46557301  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 43129218 - 43129291
Alignment:
Q  191 atgcaaattaacctgaagagggaaatcaattatggtacacttactaataataatagataatgattatttcattatgctat 270  Q
    |||||||||||| ||||||||||||||||||||||||   || |   |||||||| ||||| ||||||||||||||||||    
T  43129218 atgcaaattaacgtgaagagggaaatcaattatggta---ttgc---taataatatataattattatttcattatgctat 43129291  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 429 - 522
Target Start/End: Complemental strand, 3067017 - 3066924
Alignment:
Q  429 taaaacatgtttttgattccct-tatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 522  Q
    ||||||||||||||   ||||| |||||||||| ||||||| ||||||| ||||| |||||||||  |||||||| || ||||||||||| ||||    
T  3067017 taaaacatgttttttgatccctctatttaaaaaatcaacaatttttttgttcccc-tccccctcaagatgatgtgacatgctcattaatgacatg 3066924  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 1691727 - 1691648
Alignment:
Q  423 cttttataaaacatgtttttgattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtg 502  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  1691727 cttttttaaaacatgttttttatccccctatttaaaaagtcaacaaattttttgatctccctccccctcaggatgatgtg 1691648  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 438 - 522
Target Start/End: Original strand, 1690754 - 1690838
Alignment:
Q  438 tttttgattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 522  Q
    |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||  || | |||||| ||||||||||| ||||    
T  1690754 tttttgatccccttattcaaaaagtcaacatattttttggtccccctccccctcatgattacgtggcatgctcattaatgacatg 1690838  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 517
Target Start/End: Complemental strand, 24693857 - 24693794
Alignment:
Q  454 ttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatg 517  Q
    ||||||| |||||||||||||||||||||||| | || |   |||||||||| |||||||||||    
T  24693857 ttaaaaaatcaacaaattttttggtccccctctctcttaaggtgatgtggcatgctcattaatg 24693794  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 424 - 522
Target Start/End: Complemental strand, 1277898 - 1277799
Alignment:
Q  424 ttttataaaacatgttttt-gattcccttatttaaaaagtcaacaaatt-ttttggtccccctccccctcagaatgatgtggcaggctcattaatgccat 521  Q
    ||||||||||||||||||| ||| ||| |||||||||||| |||||||| ||||||||||||||||| |||| ||||||| ||| ||||||||||| |||    
T  1277898 ttttataaaacatgttttttgatccccctatttaaaaagttaacaaatttttttggtccccctccccttcaggatgatgt-gcatgctcattaatgacat 1277800  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 43273537 - 43273604
Alignment:
Q  321 gtttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaactatcgtcggtt 388  Q
    |||| ||||||| | || ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  43273537 gtttaaagctccacggcagttaactgctgatggaaaataaccacatcggtagttaactatcgccggtt 43273604  T

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Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 451 - 522
Target Start/End: Complemental strand, 16219897 - 16219826
Alignment:
Q  451 tatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 522  Q
    |||||||||||| |||||||||||||||||||||||| | | ||||||||||||| ||||||||||| ||||    
T  16219897 tatttaaaaagtgaacaaattttttggtccccctccctccctgaatgatgtggcatgctcattaatgacatg 16219826  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 424 - 522
Target Start/End: Complemental strand, 16222611 - 16222511
Alignment:
Q  424 ttttataaaacatgttttt-gattccct-tatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccat 521  Q
    |||| |||||||||||||| ||| |||  |||||||||||| ||||||||||||||||||||||||||   | ||||||||||| ||||||||||| |||    
T  16222611 ttttctaaaacatgttttttgatcccccctatttaaaaagtgaacaaattttttggtccccctcccccctcggatgatgtggcatgctcattaatgacat 16222512  T
Q  522 g 522  Q
    |    
T  16222511 g 16222511  T

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Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 424 - 522
Target Start/End: Original strand, 12172419 - 12172518
Alignment:
Q  424 ttttataaaacatgttttt-gattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 522  Q
    |||| |||||||||||||| ||  ||| ||||||||||||||||||||||||||||| |||||||  |||| ||||||||| | ||||||||||| ||||    
T  12172419 ttttctaaaacatgttttttgacccccctatttaaaaagtcaacaaattttttggtcaccctccctttcaggatgatgtggtatgctcattaatgacatg 12172518  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 447 - 516
Target Start/End: Complemental strand, 12173470 - 12173401
Alignment:
Q  447 cccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaat 516  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||| ||||||||||| | ||||||||    
T  12173470 cccttgtttaaaaagtcaacaaattttttgctcaccctccccctcaggatgatgtggcatgttcattaat 12173401  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 10087963 - 10087906
Alignment:
Q  322 tttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaacta 379  Q
    ||||||||||||| || ||| |||| ||||||||||||||||||||| ||||||||||    
T  10087963 tttgaagctccgcggcagtttactgtcgatggaaaataaccacatcgatagttaacta 10087906  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 8875332 - 8875288
Alignment:
Q  319 aggtttgaagctccgcagcggttaactgccgatggaaaataacca 363  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||    
T  8875332 aggtttgaagctctgcagcagttaattgccgatggaaaataacca 8875288  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 9853667 - 9853718
Alignment:
Q  328 gctccgcagcggttaactgccgatggaaaataaccacatcggtagttaacta 379  Q
    |||||||||| ||||||| || ||||||||||||||||||  ||||||||||    
T  9853667 gctccgcagcagttaacttccaatggaaaataaccacatcaatagttaacta 9853718  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 45428641 - 45428574
Alignment:
Q  424 ttttataaaacatgtttttgattc-ccttatttaaaaagtcaacaaattttttggtccccctccccct 490  Q
    |||| |||||||||||||| ||   |||| || ||||||||||||||||||||||| |||||||||||    
T  45428641 ttttctaaaacatgttttttatcatcctttttaaaaaagtcaacaaattttttggttcccctccccct 45428574  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 485
Target Start/End: Original strand, 45427551 - 45427584
Alignment:
Q  452 atttaaaaagtcaacaaattttttggtccccctc 485  Q
    ||||||||||||||||||| ||||||||||||||    
T  45427551 atttaaaaagtcaacaaatcttttggtccccctc 45427584  T

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