View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_10 (Length: 364)
Name: NF9439_low_10
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_10 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 303622 - 303970
Alignment:
| Q |
1 |
acttttccttaaccattaaatctgaagaggactctcaagatagttgcaagactaattccacccctggtgctagaggatctcacaaaagaaggtactaatc |
100 |
Q |
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| T |
303622 |
acttttccttaaccattaaatctgaagaggactctcaagatagttgcaagactaattccacccctggtgctagaggatctcacaaaagaaggtactaatc |
303721 |
T |
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| Q |
101 |
attaaaaacaatcatgttaattgtttgctagctaggaatatgaacannnnnnn--------------gttaatttgcagaaaaactagagaaacgtgtga |
186 |
Q |
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| T |
303722 |
attaaaaacaatcatgttaattgtttgctagctaggaatatgaacatttttttatttattgatcatggttaatttgcagaaaaactagagaaacgtgtga |
303821 |
T |
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| Q |
187 |
ggaagtgtcagaaagaccaacagatgatgggcatgaatggagaaagtatggtcaaaaaacaatccttaattccaaatactcaaggtgtgttgtattgtgt |
286 |
Q |
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| T |
303822 |
ggaagtgtcagaaagaccaacagatgatgggcatgaatggagaaagtatggtcaaaaaacaatccttaattccaaatactcaaggtgtgttgtattgtgt |
303921 |
T |
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| Q |
287 |
atatcgatatctgtttcctaataacttttcacagtttgttcagagctta |
335 |
Q |
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| T |
303922 |
atatcgatatctgtttcctaataacttttcacagtttgttcagagctta |
303970 |
T |
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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 478702 - 478778
Alignment:
| Q |
161 |
tgcagaaaaactagagaaacgtgtgaggaagtgtcagaaagaccaacagatgatgggcatgaatggagaaagtatgg |
237 |
Q |
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| T |
478702 |
tgcagaagaactacacaaacatgggagaaggtgacagaaactccaacagatgatgggcatcaatggagacagtatgg |
478778 |
T |
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