View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_13 (Length: 348)
Name: NF9439_low_13
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 4592917 - 4592585
Alignment:
| Q |
1 |
tctgttgggtgagtattggtttgaatatcaattatatttgatggtagatttggcataaatcatatggtatatgtttaattaaatctggtgagattttgag |
100 |
Q |
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| T |
4592917 |
tctgttgggtaagtattgctttgaatatcaattatatttgatggtagatttggcataaatcatatggtatatgtttaattaaatctggtgagattttgag |
4592818 |
T |
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| Q |
101 |
atgccatgtttagttatgtaatcttttcattgtattagggattatcaagctttctgatttgcatctttcgttccatttttagcggtatcatagttttaaa |
200 |
Q |
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| T |
4592817 |
atgctatgtttagttatgtaatcttttcattgtattagggattatcaagctttctgatttgcatctttcgttccatttttagcggtatcatagttttaaa |
4592718 |
T |
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| Q |
201 |
ttatggattctgttatactatgaaccttctttatattgcggaaaaatgtggctgatgcaattgaa---ataactgctgtgatgctgttataaagatctca |
297 |
Q |
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| T |
4592717 |
ttatggattctgttatactatgaaccttctttatattgcggaaaaatgtggctgatgcaattgaaataataactgctgtgatgccgttacaaagatctca |
4592618 |
T |
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| Q |
298 |
aattcgatttaaaaccatacaattggtatatag |
330 |
Q |
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| T |
4592617 |
aattcgatttaaaaccatacaattggtatatag |
4592585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 4585028 - 4584970
Alignment:
| Q |
132 |
gtattagggattatcaagctttctgatttgcatctttcgttccatttttagcggtatcat |
191 |
Q |
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| T |
4585028 |
gtattagggattatcaagctttcagattttcat-tttagttccatttttactggtatcat |
4584970 |
T |
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