View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_14 (Length: 342)
Name: NF9439_low_14
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 2 - 332
Target Start/End: Original strand, 32243585 - 32243915
Alignment:
| Q |
2 |
tgggtagattatactagtggctacaaagcagaagctcgtggtttcttatgttggaaatcatgatggcgaggtgcatgacacattggaaattatggcatct |
101 |
Q |
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| T |
32243585 |
tgggtacattagactagtggctacaaagcagaagctcgtggtttcttatgttggaaatcatgatggcgaggtgcatgacacattggaaattatggcatct |
32243684 |
T |
|
| Q |
102 |
ggagaagttttcaatggtaatattaatgtcgatattggtagtgataaacctaaaggtttgattgaagaagctacattatctcggtatgtccaaggaggaa |
201 |
Q |
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| T |
32243685 |
ggagaagttttcaatggtaatattaatgtcgatattggtagtgctaaacctaaaggtttgattgaagaagctacattatcccggtatgtccaaggaggaa |
32243784 |
T |
|
| Q |
202 |
gtgtactggtgcttggggcctttatgggttacattctctgttgggttatacatgcaaggaagaagcctgagtccaagagtggttgtaccatcgcgaagac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32243785 |
gtgtactggtgcttggggcctttatgggttacattctctgttgggttatacatgcaaggaagaagcctgagtccaagagtggttgtactatcgcgaagac |
32243884 |
T |
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| Q |
302 |
tgagaaacatgattagttactactctttact |
332 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
32243885 |
tgagaaacatgattagttactactctttact |
32243915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 32248683 - 32249003
Alignment:
| Q |
19 |
tggctacaaagcagaagctcgtggtttcttatgttggaaatcatgatggcgaggtgcatgacacattggaaattatggcatctggagaagttttcaatgg |
118 |
Q |
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|||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| | | ||| |
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| T |
32248683 |
tggctacaaagcagaatctcgtgatttcttatgttggtaatcatgatggcgaggtgcatgacacattggagattctggaatctggagaagttgttagtgg |
32248782 |
T |
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| Q |
119 |
---------------taatattaatgtcgatattggtagtgataaacctaaaggtttgattgaagaagctacattatctcggtatgtccaaggaggaagt |
203 |
Q |
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| T |
32248783 |
tggtggtggtaacgataatgttaatggcggtattggtagtgctaaacctgaaggtcagattaaagaatccacgttgtcgtggtatgtccagggaggaagt |
32248882 |
T |
|
| Q |
204 |
gtactggtgcttggggcctttatgggttacattctctgttgggttatacatgcaaggaaga---agcctgagtccaagagtggttgtaccatcgcgaaga |
300 |
Q |
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||||| |||||||||||||||||||| |||||||| ||| ||| |||||| ||||||| |||| ||||||| |||||||| || | || ||||| |
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| T |
32248883 |
gtactagtgcttggggcctttatgggctacattcttggtttcgtttcacatgctaggaagaagcagcccgagtccaggagtggttttagccccgtgaaga |
32248982 |
T |
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| Q |
301 |
ctga-gaaacatgattagtta |
320 |
Q |
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|||| |||||||||||||||| |
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| T |
32248983 |
ctgaggaaacatgattagtta |
32249003 |
T |
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