View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_16 (Length: 325)
Name: NF9439_low_16
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 28 - 317
Target Start/End: Complemental strand, 17754071 - 17753782
Alignment:
| Q |
28 |
accatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctctatgaaatcag |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754071 |
accatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctctatgaaatcag |
17753972 |
T |
|
| Q |
128 |
gagcaaaagcactccagctctcaatgtactctttggcccagatgtaaactatgccactcaaagaaacagacaaaacaataggatgtacaggatgccacgc |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17753971 |
gagcaaaagcactccagctctcaatgtactctttggcccagatataaactatgccactcaaagaaacagacaaaacaataggatgtacaggatgccatgc |
17753872 |
T |
|
| Q |
228 |
taaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcccatatgtaaatcttgtgctctcctttgct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17753871 |
taaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcccatatgtaaatcttgtgctctcctttgct |
17753782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 28 - 317
Target Start/End: Complemental strand, 17763058 - 17762769
Alignment:
| Q |
28 |
accatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctctatgaaatcag |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17763058 |
accatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctctatgaaatcag |
17762959 |
T |
|
| Q |
128 |
gagcaaaagcactccagctctcaatgtactctttggcccagatgtaaactatgccactcaaagaaacagacaaaacaataggatgtacaggatgccacgc |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17762958 |
gagcaaaagcactccagctctcaatgtactctttggcccagatataaactatgccactcaaagaaacagacaaaacaataggatgtacaggatgccatgc |
17762859 |
T |
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| Q |
228 |
taaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcccatatgtaaatcttgtgctctcctttgct |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17762858 |
taaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcccatatgtaaatcttgtgctctcctttgct |
17762769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 17739922 - 17739628
Alignment:
| Q |
23 |
ctatgaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctctatgaa |
122 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17739922 |
ctatgaccatataatgttcacatacattatcagtgtcaggattcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctctttgaa |
17739823 |
T |
|
| Q |
123 |
atcaggagcaaaagcactccagctctcaatgtactctttggcccagatgtaaactatgccactcaaagaaacagacaaaacaataggatgtacaggatgc |
222 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| ||| ||||||||||| |
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| T |
17739822 |
atcaggagcaaaagcactccagttctcaatgtactctttggcccagatataaactatgccacacaaagaaacagacacaacaattggacgtacaggatgc |
17739723 |
T |
|
| Q |
223 |
cacgctaaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcccatatgtaaatcttgtgctctcctttgct |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
17739722 |
cacgctaaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagctctatcccatatgtaaatcttgtgctctcctttgct |
17739628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 15736028 - 15735736
Alignment:
| Q |
22 |
actatgaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctctatga |
121 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
15736028 |
actatgaccatataacgttcacataccttatcagtctcagtattcaaatcaaattcatcttctcgctccacatactcctcattttcctcgatctctttga |
15735929 |
T |
|
| Q |
122 |
aatcaggagcaaaagcactccagctctcaatgtactctttggcccagatgtaaactatgccactcaaagaaacagacaaaacaataggatgtacaggatg |
221 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||| ||| |||||||||| |
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| T |
15735928 |
aatcaggagcaaaagcactccagttctcaatgtaatctttggcccagatataaactatgccactcaaagaaacagatacaacaattggacgtacaggatg |
15735829 |
T |
|
| Q |
222 |
ccacgctaaatcaataagggcttccttaggcccttcaaggattttcacaagatgtccagttctagcccatatgtaaatcttgtgctctccttt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
15735828 |
ccacgctaaatcaataagggcttccttaggcccttcaaggatttttacaagatgtccagctctatcccatatgtaaatcttgtgctctccttt |
15735736 |
T |
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