View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9439_low_17 (Length: 321)

Name: NF9439_low_17
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9439_low_17
NF9439_low_17
[»] chr1 (4 HSPs)
chr1 (17-312)||(46114064-46114359)
chr1 (26-122)||(23480983-23481076)
chr1 (57-122)||(5429283-5429348)
chr1 (54-122)||(38685415-38685483)
[»] chr3 (5 HSPs)
chr3 (11-122)||(17757669-17757777)
chr3 (11-122)||(19058989-19059097)
chr3 (26-122)||(53047240-53047333)
chr3 (26-116)||(2702138-2702225)
chr3 (17-58)||(21799912-21799953)
[»] chr7 (6 HSPs)
chr7 (26-122)||(45286429-45286522)
chr7 (26-122)||(11642451-11642544)
chr7 (26-122)||(16375765-16375858)
chr7 (57-122)||(9141346-9141411)
chr7 (57-122)||(45418627-45418692)
chr7 (26-110)||(45823750-45823831)
[»] chr8 (5 HSPs)
chr8 (26-122)||(30437170-30437263)
chr8 (57-122)||(604221-604286)
chr8 (26-93)||(1852220-1852284)
chr8 (55-122)||(44434300-44434367)
chr8 (57-122)||(1199516-1199581)
[»] chr6 (2 HSPs)
chr6 (26-122)||(1394027-1394120)
chr6 (54-122)||(17905830-17905898)
[»] chr5 (4 HSPs)
chr5 (57-122)||(19123169-19123234)
chr5 (57-123)||(14164562-14164628)
chr5 (26-122)||(31486316-31486409)
chr5 (54-100)||(31487356-31487402)
[»] scaffold0013 (2 HSPs)
scaffold0013 (58-122)||(104645-104709)
scaffold0013 (58-122)||(127294-127358)
[»] chr4 (5 HSPs)
chr4 (54-122)||(47428128-47428196)
chr4 (57-122)||(10466690-10466755)
chr4 (58-115)||(2479389-2479446)
chr4 (26-117)||(18000601-18000689)
chr4 (26-123)||(41851195-41851290)
[»] scaffold0059 (1 HSPs)
scaffold0059 (58-122)||(71356-71420)
[»] chr2 (1 HSPs)
chr2 (26-117)||(20640129-20640217)
[»] scaffold1155 (1 HSPs)
scaffold1155 (57-117)||(837-897)
[»] scaffold0345 (1 HSPs)
scaffold0345 (57-117)||(9320-9380)
[»] scaffold0105 (1 HSPs)
scaffold0105 (57-117)||(29600-29660)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 46114064 - 46114359
Alignment:
Q  17 atcttcaaaccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaa 116  Q
    ||||||||||||||| | |||||||| |||||||||||||||   ||||| |  |||||||||||||||||||||||||||||||| |||||||||||||    
T  46114064 atcttcaaaccttctatcgacgtaacactcgaaatagcaaca---tacaatttcccatgagagaatacatgtgttggaagatatacgccaacatttttaa 46114160  T
Q  117 gtgactaacctaatagtcattacaaatgatatagcaaaaggaaattgccttcttttaaac---aaggcaattatcatgtatgttggctctaaagataacc 213  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||   || |||||| |||||| | ||||||||||||||||||    
T  46114161 gtgactgacctaatagtcattacaaatgatatagcaaaaggaaattgtgttcttttaaacttgaaagcaattctcatgtctcttggctctaaagataacc 46114260  T
Q  214 tgggtataaagacaatgtcactaacacaacttccggatataacctttccctcgagcacatatcttttcattctagtgataatcaacctgattcctttgc 312  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  46114261 tgggtataaagacaatgtcaccaacacaacttccagatataacctttacctcgagcacatatcttttcattctagtgataatcaacctggtttctttgc 46114359  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 23480983 - 23481076
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||| || |||||||| |||||||||||   |||||||||||| ||||| |||||| ||||||| |||||||||||||||| |||||| ||||    
T  23480983 ccttctctggatgtaactcttgaaatagcaac---atacaactgtccttgagaaaatacaggtgttggtagatatacaccaacatgtttaagcgact 23481076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 5429348 - 5429283
Alignment:
Q  57 caacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||| |||||||||| |||||| |||||| ||||||| |||||||||||||||| |||||| ||||    
T  5429348 caacgtacaactgtctatgagaaaatacaggtgttggtagatatacaccaacatgtttaagcgact 5429283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 38685483 - 38685415
Alignment:
Q  54 caacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    ||||||||||||||||| | ||||| |||||| | ||||| ||||||| |||||||| |||||| ||||    
T  38685483 caacaacatacaactgttcgtgagaaaatacaggcgttggtagatataaaccaacatgtttaagcgact 38685415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 17757777 - 17757669
Alignment:
Q  11 atcatcatcttcaaaccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacat 110  Q
    |||| ||||||||  |||||||| || |||||||| ||||   ||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||    
T  17757777 atcaacatcttcagtccttctctagatgtaactcttgaaa---caacaacatacaactgtccgtgagaaaatacaggtgttggtagatatacaccaacat 17757681  T
Q  111 ttttaagtgact 122  Q
     |||||| ||||    
T  17757680 gtttaagcgact 17757669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 19059097 - 19058989
Alignment:
Q  11 atcatcatcttcaaaccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacat 110  Q
    |||| ||||||||  |||||||| || |||||||| ||||   ||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||    
T  19059097 atcaacatcttcagtccttctctagatgtaactcttgaaa---caacaacatacaactgtccgtgagaaaatacaggtgttggtagatatacaccaacat 19059001  T
Q  111 ttttaagtgact 122  Q
     |||||| ||||    
T  19059000 gtttaagcgact 19058989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 53047240 - 53047333
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||| || |||||||| |||| |||||||   |||| |||||| ||||| ||||||| |||||| |||||||||||||||| |||||| ||||    
T  53047240 ccttctctggatgtaactcttgaaacagcaaca---tacatctgtccgtgagaaaatacatttgttggtagatatacaccaacatgtttaagcgact 53047333  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 2702225 - 2702138
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaa 116  Q
    |||||||| || |||||||| |||| |||||||   ||||||||||| ||||| |||||| ||||||| ||||||||| |||||| |||||    
T  2702225 ccttctctagatgtaactcttgaaacagcaaca---tacaactgtccgtgagaaaatacaggtgttggtagatatacatcaacatgtttaa 2702138  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 21799953 - 21799912
Alignment:
Q  17 atcttcaaaccttctcttgacgtaactctcgaaatagcaaca 58  Q
    ||||||||||||||||| || ||||||||||||| |||||||    
T  21799953 atcttcaaaccttctctagatgtaactctcgaaacagcaaca 21799912  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 45286522 - 45286429
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||| || |||||||| ||||   ||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| |||||| ||||    
T  45286522 ccttctctggatgtaactcttgaaa---caacaacatacaactgtccgtgagaaaatacaggtgttggtagatatacaccaacatgtttaagcgact 45286429  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 11642451 - 11642544
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||| || |||||||| |||| ||||||   |||||||||||| ||||| |||||| ||||||| |||||||||||||||| |||||| ||||    
T  11642451 ccttctctggatgtaactcttgaaacagcaac---atacaactgtccgtgagaaaatacaggtgttggtagatatacaccaacatgtttaagcgact 11642544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 16375765 - 16375858
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||| || |||||||| ||||   ||||| ||||||| ||||| ||||| |||||| ||||||| |||||||||||||||| |||||| ||||    
T  16375765 ccttctctggatgtaactcttgaaa---caacatcatacaattgtccttgagaaaatacaggtgttggtagatatacaccaacatgtttaagcgact 16375858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 9141346 - 9141411
Alignment:
Q  57 caacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    ||||||| || ||||||||||| |||||| ||||||| ||||||||||||||||  ||||||||||    
T  9141346 caacatagaaatgtccatgagaaaatacaggtgttggtagatatacaccaacatgcttaagtgact 9141411  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 45418627 - 45418692
Alignment:
Q  57 caacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||||||||||| ||||| |||||| ||||||| ||||||||| || ||| |||||| ||||    
T  45418627 caacatacaactgtccgtgagaaaatacaggtgttggtagatatacatcatcatgtttaagcgact 45418692  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 45823831 - 45823750
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacat 110  Q
    |||| ||||||||||||||| |||| ||| |||   || |||||||||||||| |||||| | ||||| || |||||||||||||    
T  45823831 ccttgtcttgacgtaactcttgaaacagctaca---tataactgtccatgagaaaatacaggcgttggtaggtatacaccaacat 45823750  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 30437170 - 30437263
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||| || |||||||| |||||||||||   |||||||||||  ||||| |||||| ||||||| |||||||||||||||| |||||| ||||    
T  30437170 ccttctctggatgtaactcttgaaatagcaac---atacaactgtctgtgagaaaatacaggtgttggtagatatacaccaacatgtttaagcgact 30437263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 604221 - 604286
Alignment:
Q  57 caacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||||||||||| | ||| |||||| ||||||| |||||||||||||||| |||||| ||||    
T  604221 caacatacaactgtccgtaagaaaatacaggtgttggtagatatacaccaacatatttaagcgact 604286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 1852284 - 1852220
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttgg 93  Q
    ||||||||||| |||||||| ||||   ||||||||||||||||||||||||| |||||| |||||||    
T  1852284 ccttctcttgatgtaactcttgaaa---caacaacatacaactgtccatgagaaaatacaggtgttgg 1852220  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 44434367 - 44434300
Alignment:
Q  55 aacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||||||||||||| ||||| | |||| ||||||  |||||||||||||||| |||||| ||||    
T  44434367 aacaacatacaactgtccgtgagaaagtacaagtgttgatagatatacaccaacatgtttaagcgact 44434300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 1199581 - 1199516
Alignment:
Q  57 caacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||||||||| | ||||| |||||| ||||||| |||||||||| ||||| |||||| ||||    
T  1199581 caacatacaactgttcgtgagaaaatacaggtgttggtagatatacacaaacatgtttaagcgact 1199516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 1394120 - 1394027
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||| || |||||||| ||||   ||| ||||||||||||||| ||||| |||| | ||||||| |||||||||||||||| |||||||||||    
T  1394120 ccttctctagatgtaactcttgaaa---caataacatacaactgtccgtgagaaaatataggtgttggtagatatacaccaacatgtttaagtgact 1394027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 17905830 - 17905898
Alignment:
Q  54 caacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    ||||||||||||||||||  ||||| |||||| ||||||| |||||||||||||||| |||||| ||||    
T  17905830 caacaacatacaactgtctgtgagaaaatacaggtgttggtagatatacaccaacatgtttaagcgact 17905898  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 19123234 - 19123169
Alignment:
Q  57 caacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| |||||| ||||    
T  19123234 caacatacaactgtccgtgagaaaatacaggtgttggtagatatacaccaacatgtttaagcgact 19123169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 14164562 - 14164628
Alignment:
Q  57 caacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgacta 123  Q
    |||||||||||||||| ||||| |||||| ||||||| ||||||||| |||||| |||||| |||||    
T  14164562 caacatacaactgtccgtgagaaaatacaggtgttggtagatatacaacaacatgtttaagcgacta 14164628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 31486316 - 31486409
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||| || |||||||| |||| ||||||   ||||||||||||  |||| |||||| ||||||| |||||||||| ||||| |||||| ||||    
T  31486316 ccttctctggatgtaactcttgaaaaagcaac---atacaactgtccgcgagaaaatacaggtgttggtagatatacacaaacatgtttaagcgact 31486409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 31487356 - 31487402
Alignment:
Q  54 caacaacatacaactgtccatgagagaatacatgtgttggaagatat 100  Q
    ||||||||||||||||||| ||||| |||||| ||||||| ||||||    
T  31487356 caacaacatacaactgtccgtgagaaaatacaggtgttggtagatat 31487402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 104709 - 104645
Alignment:
Q  58 aacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    ||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| |||||| ||||    
T  104709 aacatacaactgtccgtgagaaaatacaggtgttggtagatatacaccaacatgtttaagcgact 104645  T

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Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 127358 - 127294
Alignment:
Q  58 aacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    ||||||||||||||  ||||| |||| | ||||||| ||||||||| |||||| |||||| ||||    
T  127358 aacatacaactgtctgtgagaaaatataggtgttggtagatatacatcaacatgtttaagcgact 127294  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 47428128 - 47428196
Alignment:
Q  54 caacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    ||||||||||||||||||| ||| | |||||| ||||||| |||||||||||||||| |||||| ||||    
T  47428128 caacaacatacaactgtccgtgaaaaaatacaggtgttggtagatatacaccaacatgtttaagcgact 47428196  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 10466755 - 10466690
Alignment:
Q  57 caacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    |||||||||||||||| ||||| |||||| ||||||| ||||||||| |||||| |||||| ||||    
T  10466755 caacatacaactgtccgtgagaaaatacaggtgttggtagatatacaacaacatgtttaagcgact 10466690  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 2479389 - 2479446
Alignment:
Q  58 aacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacattttta 115  Q
    ||||||||||||| | ||||| |||||| ||||||| |||||||||||||||| ||||    
T  2479389 aacatacaactgtgcgtgagaaaatacaggtgttggtagatatacaccaacatgttta 2479446  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 18000601 - 18000689
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaag 117  Q
    |||||||| || |||||||| |||| ||||| |   ||||||||||| | ||| |||||| ||||||| |||||||||||||||| ||||||    
T  18000601 ccttctctggatgtaactcttgaaacagcaata---tacaactgtccgtaagaaaatacaggtgttggtagatatacaccaacatgtttaag 18000689  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 41851195 - 41851290
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatataca-ccaacatttttaagtgacta 123  Q
    |||||||| || |||||||| ||||   || |||||||||||||||| ||||| |||||| ||||| | ||||||||| ||||||| |||||| |||||    
T  41851195 ccttctctagatgtaactcttgaaa---catcaacatacaactgtccgtgagaaaatacaggtgttagtagatatacacccaacatgtttaagcgacta 41851290  T

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Target: scaffold0059 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 71356 - 71420
Alignment:
Q  58 aacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaagtgact 122  Q
    ||||||||||||||| ||||| |||||| ||||||| ||||||||| |||||| |||||| ||||    
T  71356 aacatacaactgtccgtgagaaaatacaggtgttggtagatatacatcaacatgtttaagcgact 71420  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 20640129 - 20640217
Alignment:
Q  26 ccttctcttgacgtaactctcgaaatagcaacaacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaag 117  Q
    |||||||| || |||||||| |||| ||||| |   ||||||||||| | ||| |||||| ||||||| |||||||||||||||| ||||||    
T  20640129 ccttctctggatgtaactcttgaaacagcaata---tacaactgtccgtaagaaaatacaggtgttggtagatatacaccaacatgtttaag 20640217  T

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Target: scaffold1155 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 837 - 897
Alignment:
Q  57 caacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaag 117  Q
    |||||||||| ||||| ||||| ||||||  |||||| |||||||||||||||| ||||||    
T  837 caacatacaattgtccgtgagaaaatacagatgttggtagatatacaccaacatgtttaag 897  T

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Target: scaffold0345 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 9380 - 9320
Alignment:
Q  57 caacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaag 117  Q
    |||||||||| ||||| ||||| ||||||  |||||| |||||||||||||||| ||||||    
T  9380 caacatacaattgtccgtgagaaaatacagatgttggtagatatacaccaacatgtttaag 9320  T

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Target: scaffold0105 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 29600 - 29660
Alignment:
Q  57 caacatacaactgtccatgagagaatacatgtgttggaagatatacaccaacatttttaag 117  Q
    |||||||||| ||||| ||||| ||||||  |||||| |||||||||||||||| ||||||    
T  29600 caacatacaattgtccgtgagaaaatacagatgttggtagatatacaccaacatgtttaag 29660  T

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