View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9439_low_2 (Length: 641)

Name: NF9439_low_2
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9439_low_2
NF9439_low_2
[»] chr5 (6 HSPs)
chr5 (9-624)||(14341045-14341661)
chr5 (59-370)||(21208574-21208890)
chr5 (260-370)||(31887179-31887289)
chr5 (260-368)||(17293963-17294071)
chr5 (260-292)||(25803066-25803098)
chr5 (260-292)||(42461991-42462023)
[»] chr1 (3 HSPs)
chr1 (260-370)||(46137465-46137575)
chr1 (260-290)||(32924967-32924997)
chr1 (260-292)||(36776644-36776676)
[»] chr8 (1 HSPs)
chr8 (260-363)||(18654105-18654207)
[»] chr6 (4 HSPs)
chr6 (260-362)||(11984704-11984806)
chr6 (260-292)||(21273417-21273449)
chr6 (260-292)||(23667075-23667107)
chr6 (260-319)||(16227190-16227249)
[»] chr4 (2 HSPs)
chr4 (260-370)||(44473027-44473137)
chr4 (260-290)||(42067649-42067679)
[»] chr3 (6 HSPs)
chr3 (260-368)||(21630224-21630332)
chr3 (260-292)||(2289266-2289298)
chr3 (260-292)||(26504390-26504422)
chr3 (260-290)||(20303639-20303669)
chr3 (260-292)||(3569996-3570028)
chr3 (260-292)||(51464611-51464643)
[»] chr7 (7 HSPs)
chr7 (260-370)||(19160460-19160570)
chr7 (260-370)||(20759859-20759969)
chr7 (260-319)||(7810444-7810503)
chr7 (260-370)||(19407121-19407231)
chr7 (260-292)||(6670501-6670533)
chr7 (260-292)||(14553209-14553241)
chr7 (260-292)||(26178038-26178070)
[»] scaffold0741 (1 HSPs)
scaffold0741 (260-292)||(6731-6763)
[»] chr2 (3 HSPs)
chr2 (260-362)||(21862575-21862677)
chr2 (325-370)||(11269198-11269243)
chr2 (260-292)||(18857300-18857332)
[»] scaffold0073 (1 HSPs)
scaffold0073 (260-292)||(29540-29572)
[»] scaffold0065 (1 HSPs)
scaffold0065 (260-292)||(42834-42866)


Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 9 - 624
Target Start/End: Complemental strand, 14341661 - 14341045
Alignment:
Q  9 gtttggtgttgcagattgtttgcaagggtgctaaaatatcattctagatactttagggcatgcgttagcagacagtacttgatataccattttgccttct 108  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  14341661 gtttggtgttgcagattgtttgcaagggtgctaaaatgtcattctagctactttagggtatgcgttagcagacactacttggtataccattttgccttct 14341562  T
Q  109 ttggtggcggattttactaggggcaaacatggttttcctaacttccattttccttagacatttccgatcctttattttgtagtttttcctctattacttt 208  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||    
T  14341561 ttggtagcggattttactagggacaaacatggttttcctaacttccatttttcttagacatttctgatcctttatattgtagtttttcctctattacttt 14341462  T
Q  209 cgagggttttggtttagtcccacctcttgtaaatannnnnnnnnnnnnnnnaataatattacgtattggaaaggcggtagaggaatgatgtttatgatgc 308  Q
    ||||||||||||| |||||||||||||||||||||                ||||||||||| ||||| |||||||||||||||||||  ||||||||||    
T  14341461 cgagggttttggtctagtcccacctcttgtaaatattttttttctttttttaataatattacatattgaaaaggcggtagaggaatgagatttatgatgc 14341362  T
Q  309 gtgccaacctaattaaaatgcttc-ggacttcccccgatgcctaacctttctcttgaccttatnnnnnnnntgttacattaaattatttcaactgcctaa 407  Q
    ||||||||||||||  ||||||||  |||||||||||||| ||||||||||||||||||||||        |||||||||||||||||| ||||||||||    
T  14341361 gtgccaacctaattggaatgcttcaagacttcccccgatgtctaacctttctcttgaccttataaaaaaaatgttacattaaattattttaactgcctaa 14341262  T
Q  408 aattcaagtaaatgtcaagtgccaatcaattaaagtacacacgaattttaaataggtatcgcaaagtacacaagaattttaaataggtatcgnnnnnnnc 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       |    
T  14341261 aattcaagtaaatgtcaagtgccaatcaattaaagtacacacgaattttaaataggtatcgcaaagtacacaggaattttaaataggtatcgaaaaaaac 14341162  T
Q  508 nnnnnnncttacttaatacatgtcattatagacacaaataatactaacaaattttttcaaaaaagaaataatactatcttatataattatttgacaatta 607  Q
           |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14341161 tttttttcttacttaatacatgttactatagacacaaataatactaacaaattttttcaaaaaagaaataatactatcttatataattatttgacaatta 14341062  T
Q  608 taattgagtgacaatat 624  Q
    |||||||||||||||||    
T  14341061 taattgagtgacaatat 14341045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 59 - 370
Target Start/End: Complemental strand, 21208890 - 21208574
Alignment:
Q  59 ctttagggcatgcgttagcagacagtacttgatataccattttgccttcttt---ggtggcggattttactaggggcaaacatggttttcctaacttcca 155  Q
    |||| |||||| ||||| |||||| || |||  ||| || ||| ||||||||   ||||||||||||| |||||| || | || |||  |||||||||||    
T  21208890 ctttggggcatacgttatcagacactatttggcataacactttaccttctttttgggtggcggattttgctagggacagaaattgttcgcctaacttcca 21208791  T
Q  156 ttttccttagacatttccgatcctttattttgtagtttttcctcta-ttactttcgagggttttggtttagtcccacctcttgtaaatannnnnnnnnnn 254  Q
    ||||  |||| |||||| ||||||||||||||||||||||| |||  |||| || ||||||||||   ||||||| ||||||||| |||               
T  21208790 ttttttttaggcatttctgatcctttattttgtagtttttcttcttgttacgtttgagggttttgacctagtcccccctcttgtatatatactttttttt 21208691  T
Q  255 nnnnn-aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaac 353  Q
          ||||||||||||||||| |||||||||||| ||  || |||| || || ||||||||||| || ||||||||| |||| | ||||||||| |||    
T  21208690 ttttttaataatattacgtattgaaaaggcggtagacgatggaggtttctgttgggtgccaacctagttgaaatgcttcagactcctcccgatgcccaac 21208591  T
Q  354 ctttctcttgaccttat 370  Q
    || ||||||| ||||||    
T  21208590 ctatctcttggccttat 21208574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 31887179 - 31887289
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaacctttct 359  Q
    ||||||||||||||||||||||||||||||| |  |  |||| || |  ||||||||||| || | ||||  | |  |||||| ||||||||||||||||    
T  31887179 aataatattacgtattggaaaggcggtagagcatgggggtttctgtttggtgccaacctagttgagatgcggcagttttcccctgatgcctaacctttct 31887278  T
Q  360 cttgaccttat 370  Q
    |||||||||||    
T  31887279 cttgaccttat 31887289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 17293963 - 17294071
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaacctttct 359  Q
    ||||||||||||||||| ||||||| |||||||  |  |||| || || ||| ||||||| ||  |||||||| ||||  ||| ||| ||||||||||||    
T  17293963 aataatattacgtattgtaaaggcgatagaggatgggggtttctgttgggtgtcaacctagttggaatgcttcagactcgcccggatacctaacctttct 17294062  T
Q  360 cttgacctt 368  Q
    |||| ||||    
T  17294063 cttggcctt 17294071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 25803066 - 25803098
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    |||||||||||||||||||||||||||||||||    
T  25803066 aataatattacgtattggaaaggcggtagagga 25803098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 42462023 - 42461991
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    |||||||||||||||||||||||||||||||||    
T  42462023 aataatattacgtattggaaaggcggtagagga 42461991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 46137465 - 46137575
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaacctttct 359  Q
    ||||||||||||||||| |||||||||||||||  |  |||| ||  |  ||||||||||||||||||||||| || | |||| |||||| |||||||||    
T  46137465 aataatattacgtattgaaaaggcggtagaggatgggggtttctgtgggttgccaacctaattaaaatgcttcagattcccccggatgcccaacctttct 46137564  T
Q  360 cttgaccttat 370  Q
    |||||||||||    
T  46137565 cttgaccttat 46137575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 290
Target Start/End: Complemental strand, 32924997 - 32924967
Alignment:
Q  260 aataatattacgtattggaaaggcggtagag 290  Q
    |||||||||||||||||||||||||||||||    
T  32924997 aataatattacgtattggaaaggcggtagag 32924967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 36776676 - 36776644
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    ||||||||||||||||| |||||||||||||||    
T  36776676 aataatattacgtattgaaaaggcggtagagga 36776644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 260 - 363
Target Start/End: Original strand, 18654105 - 18654207
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaacctttct 359  Q
    ||||||||||| |||||||||||||||||||||  || ||||||| || ||| ||||||| ||| |||||||| || |||||| ||| |||||||||||     
T  18654105 aataatattacatattggaaaggcggtagaggatggaagtttatgttgggtgtcaacctagttagaatgcttcaga-ttcccctgatacctaacctttca 18654203  T
Q  360 cttg 363  Q
    ||||    
T  18654204 cttg 18654207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 260 - 362
Target Start/End: Original strand, 11984704 - 11984806
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaacctttct 359  Q
    |||||||||| ||||||||||  ||||| |||||||| |||| || |  |||||||||||||||| ||||||| || |||||| ||| | ||||||||||    
T  11984704 aataatattatgtattggaaatacggtaaaggaatgaggtttctgttcggtgccaacctaattaagatgcttcagatttcccctgatacataacctttct 11984803  T
Q  360 ctt 362  Q
    |||    
T  11984804 ctt 11984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 21273417 - 21273449
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    |||||||||||||||||||||||||||||||||    
T  21273417 aataatattacgtattggaaaggcggtagagga 21273449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 23667107 - 23667075
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    |||||||||||||||||||||||||||||||||    
T  23667107 aataatattacgtattggaaaggcggtagagga 23667075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 16227190 - 16227249
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaaccta 319  Q
    ||||| |||||||||||||||||||||||||||  | ||||| || || |||||||||||    
T  16227190 aataaaattacgtattggaaaggcggtagaggatgggtgtttctgttgggtgccaaccta 16227249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 44473027 - 44473137
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaacctttct 359  Q
    |||||||||| ||||||||||||||||||||||  |  |||| ||  | ||||||||||||||  |||||||| || |  ||| ||||||||||||||||    
T  44473027 aataatattatgtattggaaaggcggtagaggatgggggtttctgtggggtgccaacctaattggaatgcttcagattctcccggatgcctaacctttct 44473126  T
Q  360 cttgaccttat 370  Q
    |||| ||||||    
T  44473127 cttggccttat 44473137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 290
Target Start/End: Original strand, 42067649 - 42067679
Alignment:
Q  260 aataatattacgtattggaaaggcggtagag 290  Q
    |||||||||||||||||||||||||||||||    
T  42067649 aataatattacgtattggaaaggcggtagag 42067679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 21630224 - 21630332
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaacctttct 359  Q
    |||||||||||||||||||||||||||||||||  |  ||||||| ||  |||||||||| ||   ||||||| ||||  ||| ||| || |||||||||    
T  21630224 aataatattacgtattggaaaggcggtagaggatgggggtttatgttggatgccaacctagttgggatgcttcagactcgcccggataccaaacctttct 21630323  T
Q  360 cttgacctt 368  Q
    |||| ||||    
T  21630324 cttggcctt 21630332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 2289298 - 2289266
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    |||||||||||||||||||||||||||||||||    
T  2289298 aataatattacgtattggaaaggcggtagagga 2289266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 26504390 - 26504422
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    |||||||||||||||||||||||||||||||||    
T  26504390 aataatattacgtattggaaaggcggtagagga 26504422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 290
Target Start/End: Complemental strand, 20303669 - 20303639
Alignment:
Q  260 aataatattacgtattggaaaggcggtagag 290  Q
    |||||||||||||||||||||||||||||||    
T  20303669 aataatattacgtattggaaaggcggtagag 20303639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 3570028 - 3569996
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    ||||||||||||||||| |||||||||||||||    
T  3570028 aataatattacgtattgaaaaggcggtagagga 3569996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 51464643 - 51464611
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    |||||||||||||||| ||||||||||||||||    
T  51464643 aataatattacgtattcgaaaggcggtagagga 51464611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 19160460 - 19160570
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaacctttct 359  Q
    |||||||||| ||||||||||||||||||||||  |  |||| ||  | ||||||||||| ||  |||||||| || |   || ||||||||||||||||    
T  19160460 aataatattatgtattggaaaggcggtagaggatgggggtttctgtggggtgccaacctagttggaatgcttcagattcttccggatgcctaacctttct 19160559  T
Q  360 cttgaccttat 370  Q
    |||| ||||||    
T  19160560 cttggccttat 19160570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 20759859 - 20759969
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaacctttct 359  Q
    |||||||||| ||||||||||||||||||||||  |  |||| ||  | ||||||||||| ||  |||||||| || |   || ||||||||||||||||    
T  20759859 aataatattatgtattggaaaggcggtagaggatgggggtttctgtggggtgccaacctagttggaatgcttcagattcttccggatgcctaacctttct 20759958  T
Q  360 cttgaccttat 370  Q
    |||| ||||||    
T  20759959 cttggccttat 20759969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 7810503 - 7810444
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaaccta 319  Q
    |||||||||||||||||||||||||||| ||||  |  ||||||| || |||||||||||    
T  7810503 aataatattacgtattggaaaggcggtaaaggacgggggtttatgttgggtgccaaccta 7810444  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 370
Target Start/End: Complemental strand, 19407231 - 19407121
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaacctttct 359  Q
    |||||||||||||| |||||||||| |||||||| |  |||| || || ||||||||||| ||   ||||||| |  | ||||||||||||||| ||  |    
T  19407231 aataatattacgtactggaaaggcgatagaggaagggggtttctgttgggtgccaacctagttgggatgcttcagtttccccccgatgcctaacattcat 19407132  T
Q  360 cttgaccttat 370  Q
    |||| ||||||    
T  19407131 cttggccttat 19407121  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 6670533 - 6670501
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    |||||||||||||||| ||||||||||||||||    
T  6670533 aataatattacgtattcgaaaggcggtagagga 6670501  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 14553241 - 14553209
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    ||||| |||||||||||||||||||||||||||    
T  14553241 aataaaattacgtattggaaaggcggtagagga 14553209  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 26178038 - 26178070
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    |||||||||||||||||| ||||||||||||||    
T  26178038 aataatattacgtattgggaaggcggtagagga 26178070  T

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Target: scaffold0741 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 6731 - 6763
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    |||||||||||||||||||||||||||||||||    
T  6731 aataatattacgtattggaaaggcggtagagga 6763  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 362
Target Start/End: Original strand, 21862575 - 21862677
Alignment:
Q  260 aataatattacgtattggaaaggcggtagaggaatgatgtttatgatgcgtgccaacctaattaaaatgcttcggacttcccccgatgcctaacctttct 359  Q
    |||||||||| ||||||||||||||||||||||  |  |||| ||  | ||||||||||| ||  |||||||| || |  ||| |||||| |||||||||    
T  21862575 aataatattatgtattggaaaggcggtagaggatgggggtttctgtggggtgccaacctagttggaatgcttcagattctcccggatgcccaacctttct 21862674  T
Q  360 ctt 362  Q
    |||    
T  21862675 ctt 21862677  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 11269198 - 11269243
Alignment:
Q  325 aatgcttcggacttcccccgatgcctaacctttctcttgaccttat 370  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  11269198 aatgcttcagactcctcccgatgcctaacctttatcttgaccttat 11269243  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 18857300 - 18857332
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    ||||||||||| |||||||||||||||||||||    
T  18857300 aataatattacatattggaaaggcggtagagga 18857332  T

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Target: scaffold0073 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 29572 - 29540
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    ||||||||||||||||| |||||||||||||||    
T  29572 aataatattacgtattgaaaaggcggtagagga 29540  T

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Target: scaffold0065 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 42834 - 42866
Alignment:
Q  260 aataatattacgtattggaaaggcggtagagga 292  Q
    ||||||||||||||||||||||||| |||||||    
T  42834 aataatattacgtattggaaaggcgatagagga 42866  T

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