View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9439_low_20 (Length: 314)
Name: NF9439_low_20
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 10552477 - 10552768
Alignment:
| Q |
1 |
aataaaatcaagggatatagatagcatttcaaagttgtatgaaattctcatgaaggatgcatctatgatgaatgaaattgaactactggttcaaatgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10552477 |
aataaaatcaagggatatagatagcatttcaaagttttatgaaattctcatgaagaatacatctatgatgaatgaaattgaactactggttcaaatgaat |
10552576 |
T |
|
| Q |
101 |
ttaccgacattttcataggagaatccctaactgtaaagtacacagtgaataaaaccgcgtataataggagttaccatctagcctatgctatttatcctga |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
10552577 |
ttaccgacattttcataggagaatccccaactgtaaagtacacagtgaataaaaccgcgtataataggacttactatctagcctatgctatttatcctga |
10552676 |
T |
|
| Q |
201 |
gtgagccacaattgtcaatgccatctcaatgccacaagacaatcccaatcccaagaccatttgaacgacaagaatcaacaagaatagatgtg |
292 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10552677 |
gtgagctacaattgtcaatgccatctcaatgccacaagacaatcccaatcgcaagaccatttgaacgacaagaatcaacaagaatagatgtg |
10552768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University