View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_23 (Length: 282)
Name: NF9439_low_23
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 53 - 276
Target Start/End: Complemental strand, 20400037 - 20399814
Alignment:
| Q |
53 |
atcaaccatactgaaaatttcaacaaaaaggctcgtctcctctttcaactttggattgattgacaaattaaaatccactttgcattgattgacatattaa |
152 |
Q |
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| T |
20400037 |
atcaaccatactgaaaatttcaacaaaaaggctcgtctcctctttcaactttggattgattgacaaattaaaatccactttgcattgattgacatattaa |
20399938 |
T |
|
| Q |
153 |
aatccatcatccacatgcattgaagatattccaccaatttgaaaaatagagattcttatttcttccttccccgcatataaaccatgaccagaacaatagc |
252 |
Q |
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| T |
20399937 |
aatccatcatcctcatgcattgaagatattccaccaatttgaaaaatagagattcttatttcttccttccccgcatataaaccatgaccagaacaatagc |
20399838 |
T |
|
| Q |
253 |
tttatcttctctatgacctccaaa |
276 |
Q |
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|||||||||||||||||||||||| |
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| T |
20399837 |
tttatcttctctatgacctccaaa |
20399814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 20390812 - 20390734
Alignment:
| Q |
182 |
tccaccaatttgaaaaa-tagagattcttatttcttccttccccgcatataaaccatgaccagaacaatagctttatct |
259 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||||| ||||||||||||||| |
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| T |
20390812 |
tccaccaatttgaaaaaatagagattcttatttcttccttctccacaaataaaccatgaccaccacaatagctttatct |
20390734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 20400094 - 20400050
Alignment:
| Q |
10 |
caactgagctaagcttacgagggcaaactc-aaccctatctgata |
53 |
Q |
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| T |
20400094 |
caactgagctaagcttatgagggcaaactcaaaccccatctgata |
20400050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 23312435 - 23312495
Alignment:
| Q |
182 |
tccaccaatttgaaaaatagagattcttatttcttccttccccgcatataaaccatgacca |
242 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| || ||| | |||||||||||||| |
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| T |
23312435 |
tccacaaatttgaaaaataaagattcttatttcttcttttcccaaaaataaaccatgacca |
23312495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 32811905 - 32811877
Alignment:
| Q |
6 |
ctaccaactgagctaagcttacgagggca |
34 |
Q |
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| T |
32811905 |
ctaccaactgagctaagcttacgagggca |
32811877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 7470772 - 7470800
Alignment:
| Q |
3 |
tccctaccaactgagctaagcttacgagg |
31 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7470772 |
tccctaccaactgagctaagcttacgagg |
7470800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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