View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_25 (Length: 276)
Name: NF9439_low_25
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 2124002 - 2123756
Alignment:
| Q |
19 |
aatatgtcgttgatgtcattgaaaaagacaagcatgatttattacaatttgaaagtcacatatatctatatctacaattttaatcaaatctatatttcat |
118 |
Q |
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| T |
2124002 |
aatatgtcgttgatgtcattgaaaaagacaagcatgatttattacaatttgaaagtcacatatatctatatctacaattttaatcaaatctatatttcat |
2123903 |
T |
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| Q |
119 |
aaaaaagacgttgtttataatttgcatgcgttaatgtgatnnnnnnngcgaacatacaggcacgggcatgcatgtataaatgtctgaacactagttattc |
218 |
Q |
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| T |
2123902 |
aaaaaagacgttttttataatttgcatgcgttaatgtaataaaaaaagcgaacatacaggcacgggcatgcatgtataaatgtctgaacactagttattt |
2123803 |
T |
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| Q |
219 |
aatatttttcattatttatatcatcatattataattgcaactccaaa |
265 |
Q |
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| T |
2123802 |
aatatttttcattatttatatcatcatattataattgcaactccaaa |
2123756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 39544492 - 39544406
Alignment:
| Q |
20 |
atatgtcgttgatgtcattgaaaaagacaagcatgatttattacaatttgaaagtcacatatatctatatctacaattttaatcaaa |
106 |
Q |
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| T |
39544492 |
atatgttgttggtgtcatcgaaaaagataaacatgattcattacaaattaaaagtcacaaacatttatacctataattttaatcaaa |
39544406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 34804488 - 34804534
Alignment:
| Q |
60 |
ttacaatttgaaagtcacatatatctatatctacaattttaatcaaa |
106 |
Q |
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| T |
34804488 |
ttacaatttgaaagtcacaaatatctatacttacaattttaatcaaa |
34804534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 33997686 - 33997633
Alignment:
| Q |
53 |
tgatttattacaatttgaaagtcacatatatctatatctacaattttaatcaaa |
106 |
Q |
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| T |
33997686 |
tgatttattacaatttaaaattcacaaatatctatatgtataattttaatcaaa |
33997633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 43096985 - 43096911
Alignment:
| Q |
32 |
tgtcattgaaaaagacaagcatgatttattacaatttgaaagtcacatatatctatatctacaattttaatcaaa |
106 |
Q |
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| T |
43096985 |
tgtcattgaaaaggataaacatgatttgttataattttaaagtcacgaatatctacacctataattttaatcaaa |
43096911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 46452852 - 46452925
Alignment:
| Q |
32 |
tgtcattgaaaaagacaagcatgatttattacaatttgaaagtcacatatatctatatctacaattttaatcaaa |
106 |
Q |
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| T |
46452852 |
tgtcattgaaaaa-acaagtataatttattaaaatttgaaagtcacaaacttctatatatataattttagtcaaa |
46452925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 28727899 - 28727850
Alignment:
| Q |
27 |
gttgatgtcattgaaaaagacaagcatgatttattacaatttgaaagtca |
76 |
Q |
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| T |
28727899 |
gttggtgtcattaaaaaatataagcatgatttgttacaatttgaaagtca |
28727850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 11064626 - 11064667
Alignment:
| Q |
33 |
gtcattgaaaaagacaagcatgatttattacaatttgaaagt |
74 |
Q |
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| T |
11064626 |
gtcattgaagaagataagaatgatttattacaatttgaaagt |
11064667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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