View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_26 (Length: 274)
Name: NF9439_low_26
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 27574330 - 27574135
Alignment:
| Q |
12 |
gaacctgtgagaatccaagaagaccatcaaacggtccatgtttgatcatgtaatcctcaatatattgcaaacactcatcaaagtttgtgtactctgtaaa |
111 |
Q |
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| T |
27574330 |
gaacctgtgagaatccaagaagaccatcaaacggtccatgtttgatcatgtaatcctcaatatattgcaaacactcatcaaagtttgtgtactctgtaaa |
27574231 |
T |
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| Q |
112 |
ttcctgttgttattgttgttgttgtaccacaaaaacatgttaacagagacaaacaaaacaatagataaaacctacgtatatacccaaattatgaaag |
208 |
Q |
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| T |
27574230 |
ttcctgttgttattgttgttgttgtaccacaaaaacatgttaacagagacaaac-aaacaatagataaaacctacgtatatacccaaattatgaaag |
27574135 |
T |
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