View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_28 (Length: 262)
Name: NF9439_low_28
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_28 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 68 - 262
Target Start/End: Complemental strand, 4197034 - 4196840
Alignment:
| Q |
68 |
tgtatctcatagtcatcaaaataagattaaacatgtgaagaaaagtggaaagaatatcatgaaatcagctaacctggtgcgatatacccacaagacccag |
167 |
Q |
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| T |
4197034 |
tgtatctcatagtcatcaaaataagattaaacatgtgaagaaaagtggaaagaatatcatgaaatcagctaacctggtgcgatatacccacaagacccag |
4196935 |
T |
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| Q |
168 |
ctatgacagacatggacttagttcctttcccattggattcgaccgccttagctaccccaaaatctgcgacccttgcgctaaagtcttcatccaac |
262 |
Q |
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| T |
4196934 |
ctatgacagacatggactttgttcctttcccattggattcgaccgccttagctaccccaaaatctgcgacccttgcactaaagtcttcatccaac |
4196840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 4197233 - 4197200
Alignment:
| Q |
13 |
acttggaaggtgataattatttcaatttcaaaaa |
46 |
Q |
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| T |
4197233 |
acttggaaggtgataattatttcaatttcaaaaa |
4197200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 135 - 262
Target Start/End: Original strand, 34922436 - 34922563
Alignment:
| Q |
135 |
gctaacctggtgcgatatacccacaagacccagctatgacagacatggacttagttcctttcccattggattcgaccgccttagctaccccaaaatctgc |
234 |
Q |
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| T |
34922436 |
gctaacctggtgcaatatagccacaagaaccagctatgatggacatggatttaattcctttcgcagtggtttcgactactttagctagtccaaaatctgc |
34922535 |
T |
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| Q |
235 |
gacccttgcgctaaagtcttcatccaac |
262 |
Q |
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| T |
34922536 |
cacccttgcaccaaagtctccatccaac |
34922563 |
T |
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