View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_31 (Length: 251)
Name: NF9439_low_31
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 9883178 - 9883397
Alignment:
| Q |
13 |
gttggggggattttattggtcacaacattacataaaatcatttattatcaaagtaaccatcaagaaaaaatataaaaccctagatttaatcatatctaaa |
112 |
Q |
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| T |
9883178 |
gttggggggattttattggtcacaacattacataaaatcatttattatcaaagtaaccatcaagacaaaatacaaatccctagatttaatcatatctaaa |
9883277 |
T |
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| Q |
113 |
ttacaggtcttccaacaagagtacaaacattacgacgtaataagaaaattataatattctttgaaagataattatttttcaacttgagcttttataaaga |
212 |
Q |
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| T |
9883278 |
ttacaggtcttacaacaagagtactaacattacgacgtaataagaaaattataatattctttgaaacataattatttttcaacttgagcttttataaaga |
9883377 |
T |
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| Q |
213 |
attcacaaataccattaaca |
232 |
Q |
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| T |
9883378 |
attcacaaataccatcaaca |
9883397 |
T |
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Back To:
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 24894162 - 24894242
Alignment:
| Q |
43 |
cataaaatcatttattatcaaagtaaccatcaagaaaaaatataaaaccctagatttaatcatatctaaattacaggtctt |
123 |
Q |
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|||||| ||||||| || ||||||| ||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||| |
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| T |
24894162 |
cataaattcatttaataataaagtaaatatcaagacaaaacacaaagccctagatttagtcatatctaaattacgggtctt |
24894242 |
T |
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