View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9439_low_38 (Length: 242)
Name: NF9439_low_38
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_38 |
 | |
|
| [»] chr6 (21 HSPs) |
| |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
| [»] scaffold0349 (3 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold1254 (1 HSPs) |
| | |
|
| [»] scaffold0419 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 21)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 27229126 - 27228904
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcaga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27229126 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtatagccatgagacttgagagaaattggatgaaaagagttttagaatgcaga |
27229027 |
T |
|
| Q |
122 |
atatgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaagga-aaaacttaaga-aaaaatgttctaggaaacttcctattgccgtgtgg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
27229026 |
atatgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaaggagaaaacttaagacaaaaatgttctatgaaacttcctattgccgtgtgg |
27228927 |
T |
|
| Q |
220 |
accattcaattgcttttattctt |
242 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
27228926 |
accattcaattgcttttattctt |
27228904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 28786172 - 28786039
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||| ||||| || |
|
|
| T |
28786172 |
ttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattca |
28786073 |
T |
|
| Q |
120 |
gaatatgaatgagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| |
|
|
| T |
28786072 |
gaatatgaatgagtttgtttttgtggtctgtgat |
28786039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 28781033 - 28780900
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||| |||| || ||||||| | ||||||||||||||||| |||||||||| ||||| || |
|
|
| T |
28781033 |
ttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattca |
28780934 |
T |
|
| Q |
120 |
gaatatgaatgagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| |
|
|
| T |
28780933 |
gaatatgaatgagtttgtttttgtggtctgtgat |
28780900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 27698787 - 27698900
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg-aaaagagttttagaatgcag |
120 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
27698787 |
ttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaagagtttgagaatgcag |
27698886 |
T |
|
| Q |
121 |
aatatgaatgagta |
134 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27698887 |
aatatgaatgagta |
27698900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 26655866 - 26655750
Alignment:
| Q |
39 |
aggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgcagaatatgaatgagtatg |
136 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| |||||||||||||||||||||| | |
|
|
| T |
26655866 |
aggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaag |
26655767 |
T |
|
| Q |
137 |
tttttgtggtatgtgat |
153 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
26655766 |
tttttgtggtctgtgat |
26655750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 26761837 - 26761721
Alignment:
| Q |
39 |
aggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgcagaatatgaatgagtatg |
136 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| |||||||||||||||||||||| | |
|
|
| T |
26761837 |
aggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaag |
26761738 |
T |
|
| Q |
137 |
tttttgtggtatgtgat |
153 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
26761737 |
tttttgtggtctgtgat |
26761721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 27427899 - 27428082
Alignment:
| Q |
25 |
gtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaata |
124 |
Q |
| |
|
|||| ||||| || ||||||||||||||||| || ||||| |||| || ||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
27427899 |
gtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgagaagagtttgagaatgcagaata |
27427998 |
T |
|
| Q |
125 |
tgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaagga-aaaacttaaga--aaaaatgttctaggaaacttcct |
207 |
Q |
| |
|
|||||||| |||||||||||| |||||| || |||||||| ||||||| ||||||| || ||||||| |||| |||||||||| |
|
|
| T |
27427999 |
tgaatgaggatgtttttgtgg--tgtgatgtgaaactttaagacaaggagaaaacttctgacgaaaaatggtctatgaaacttcct |
27428082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 27725138 - 27725248
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
27725138 |
ttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgca |
27725237 |
T |
|
| Q |
120 |
gaatatgaatg |
130 |
Q |
| |
|
||||||||||| |
|
|
| T |
27725238 |
gaatatgaatg |
27725248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 27718672 - 27718785
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
27718672 |
ttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaaagagtttgagaatgca |
27718771 |
T |
|
| Q |
120 |
gaatatgaatgagt |
133 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27718772 |
gaatatgaatgagt |
27718785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 28792293 - 28792184
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||| ||||| || |
|
|
| T |
28792293 |
ttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattca |
28792194 |
T |
|
| Q |
120 |
gaatatgaat |
129 |
Q |
| |
|
|||||||||| |
|
|
| T |
28792193 |
gaatatgaat |
28792184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 27604998 - 27605137
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagagga------aggtgattgtattgccatgagacttgagagaaattggatgaaaa--gagttttag |
113 |
Q |
| |
|
||||||||||||| || |||||||||||||||| ||||| |||| |||| || ||||||||| ||||||||||||||||||||| |||||| || |
|
|
| T |
27604998 |
ttggtaagtgaatgcataggaaaatgaagaggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgag |
27605097 |
T |
|
| Q |
114 |
aatgcagaatatgaatgagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
27605098 |
aatgcagaatatgaatgagtaagtttttgtggtctgtgat |
27605137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 27611295 - 27611406
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||| | |||| || ||||||| | ||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
27611295 |
ttggtaagtgaatccataggaaaatgaagaagaagaggaagctaattgcatagccatgaaaattgagagaaattggatgaaaaaagagtttgagaatgca |
27611394 |
T |
|
| Q |
120 |
gaatatgaatga |
131 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27611395 |
gaatatgaatga |
27611406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 26802336 - 26802199
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg------aaaagagttttagaa |
115 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| |||||||| || || || ||||||| | ||| ||||||||||||| |||||||||| |||| |
|
|
| T |
26802336 |
ttggtaagtgaatccataagaaaatgaagaggatgaggaaggagactgcatagccatgaaaattgtgagaaattggatgaaaaaaaaaagagtttgagaa |
26802237 |
T |
|
| Q |
116 |
tgcagaatatgaatgagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
26802236 |
tgcagaatatgaatgagtaagtttttgtggtctgtgat |
26802199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 26823709 - 26823609
Alignment:
| Q |
53 |
gaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaa--aagagttttagaatgcagaatatgaatgagtatgtttttgtggtatgt |
150 |
Q |
| |
|
|||||||||| ||| || || ||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
26823709 |
gaagaggaagttgactgcatagccatgagaattgagagaaattggacgaagaaagagtttgagaatgcagaatatgaatgagtatgttactgtggtgtgt |
26823610 |
T |
|
| Q |
151 |
g |
151 |
Q |
| |
|
| |
|
|
| T |
26823609 |
g |
26823609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 31284174 - 31284078
Alignment:
| Q |
30 |
tgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatga--aaagagttttagaatgcagaata |
124 |
Q |
| |
|
||||| || |||||| ||||||||||||||||| |||||| || ||||||||| ||||||||| ||||||| ||||| ||| ||||||||||||| |
|
|
| T |
31284174 |
tgaatacataggaaattgaagaggaagaggaagatgattgcatagccatgagatttgagagaatatggatgaagaaagaatttgagaatgcagaata |
31284078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 27338366 - 27338484
Alignment:
| Q |
30 |
tgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaatatgaat |
129 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||| ||||||| || ||||||||| ||||||||||| |||||||| | || | ||||||||||| |
|
|
| T |
27338366 |
tgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttg-----agaatatgaat |
27338460 |
T |
|
| Q |
130 |
gagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
||||| ||||||||||| |||||| |
|
|
| T |
27338461 |
gagtaagtttttgtggtctgtgat |
27338484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 27399106 - 27399224
Alignment:
| Q |
30 |
tgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaatatgaat |
129 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||| ||||||| || ||||||||| ||||||||||| |||||||| | || | ||||||||||| |
|
|
| T |
27399106 |
tgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttg-----agaatatgaat |
27399200 |
T |
|
| Q |
130 |
gagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
||||| ||||||||||| |||||| |
|
|
| T |
27399201 |
gagtaagtttttgtggtctgtgat |
27399224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 27678823 - 27678758
Alignment:
| Q |
39 |
aggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaa |
104 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| || ||||||||| || ||||||||| |||||||| |
|
|
| T |
27678823 |
aggaaattgaagtggaagaggaaggtgattgcatagccatgagattttagagaaattagatgaaaa |
27678758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 26884057 - 26884023
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaag |
56 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
26884057 |
ttggtaagtgaatccataggaaaatgaagaggaag |
26884023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 25538431 - 25538356
Alignment:
| Q |
58 |
ggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgcagaatatgaatga |
131 |
Q |
| |
|
|||||||||||| || ||||||||| |||| |||| ||||||| |||||| ||| | |||| ||||||||||||| |
|
|
| T |
25538431 |
ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaagactttgaaaatggagaatatgaatga |
25538356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 26055818 - 26055739
Alignment:
| Q |
57 |
aggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgcagaatatgaatgagta |
134 |
Q |
| |
|
||||||||||||| || ||||||||| |||| |||| |||||| |||||| ||| | |||| |||||||||||||||| |
|
|
| T |
26055818 |
aggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagta |
26055739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 13925 - 14058
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||| |||| || ||||||| | ||||||||||||||||| |||||||||| ||||| || |
|
|
| T |
13925 |
ttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattca |
14024 |
T |
|
| Q |
120 |
gaatatgaatgagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| |
|
|
| T |
14025 |
gaatatgaatgagtttgtttttgtggtctgtgat |
14058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 4964 - 5073
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||| ||||| || |
|
|
| T |
4964 |
ttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattca |
5063 |
T |
|
| Q |
120 |
gaatatgaat |
129 |
Q |
| |
|
|||||||||| |
|
|
| T |
5064 |
gaatatgaat |
5073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 14648 - 14761
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg-aaaagagttttagaatgcag |
120 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
14648 |
ttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaagagtttgagaatgcag |
14747 |
T |
|
| Q |
121 |
aatatgaatgagta |
134 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14748 |
aatatgaatgagta |
14761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 3715 - 3825
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
3715 |
ttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgca |
3814 |
T |
|
| Q |
120 |
gaatatgaatg |
130 |
Q |
| |
|
||||||||||| |
|
|
| T |
3815 |
gaatatgaatg |
3825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 8094 - 8207
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
8094 |
ttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaaagagtttgagaatgca |
8193 |
T |
|
| Q |
120 |
gaatatgaatgagt |
133 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8194 |
gaatatgaatgagt |
8207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 59464 - 59281
Alignment:
| Q |
25 |
gtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaata |
124 |
Q |
| |
|
|||| ||||| || ||||||||||||||||| || ||||| |||| || ||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
59464 |
gtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgagaagagtttgagaatgcagaata |
59365 |
T |
|
| Q |
125 |
tgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaagga-aaaacttaaga--aaaaatgttctaggaaacttcct |
207 |
Q |
| |
|
|||||||| |||||||||||| |||||| || |||||||| ||||||| ||||||| || ||||||| |||| |||||||||| |
|
|
| T |
59364 |
tgaatgaggatgtttttgtgg--tgtgatgtgaaactttaagacaaggagaaaacttctgacgaaaaatggtctatgaaacttcct |
59281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 17989333 - 17989516
Alignment:
| Q |
25 |
gtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaata |
124 |
Q |
| |
|
|||| ||||| || ||||||||||||||||| || ||||| |||| || ||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
17989333 |
gtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgagaagagtttgagaatgcagaata |
17989432 |
T |
|
| Q |
125 |
tgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaagga-aaaacttaaga--aaaaatgttctaggaaacttcct |
207 |
Q |
| |
|
|||||||| |||||||||||| |||||| || |||||||| ||||||| ||||||| || ||||||| |||| |||||||||| |
|
|
| T |
17989433 |
tgaatgaggatgtttttgtgg--tgtgatgtgaaactttaagacaaggagaaaacttctgacgaaaaatggtctatgaaacttcct |
17989516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 18073656 - 18073473
Alignment:
| Q |
25 |
gtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcagaata |
124 |
Q |
| |
|
|||| ||||| || ||||||||||||||||| || ||||| |||| || ||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
18073656 |
gtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatgagaagagtttgagaatgcagaata |
18073557 |
T |
|
| Q |
125 |
tgaatgagtatgtttttgtggtatgtgatatgtaactttaaaacaagga-aaaacttaaga--aaaaatgttctaggaaacttcct |
207 |
Q |
| |
|
|||||||| |||||||||||| |||||| || |||||||| ||||||| ||||||| || ||||||| |||| |||||||||| |
|
|
| T |
18073556 |
tgaatgaggatgtttttgtgg--tgtgatgtgaaactttaagacaaggagaaaacttctgacgaaaaatggtctatgaaacttcct |
18073473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 18699680 - 18699787
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||||||||||| || ||||||||| |||||||||| | |||| |||||||||| |||||||| |
|
|
| T |
18699680 |
ttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgagagaaactagatgaaaaaagagtttgagaatgca |
18699779 |
T |
|
| Q |
120 |
gaatatga |
127 |
Q |
| |
|
|||||||| |
|
|
| T |
18699780 |
gaatatga |
18699787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 18655757 - 18655888
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||||||||||| | ||||||| | |||||||||| |||||| |||||||||| |||||||| |
|
|
| T |
18655757 |
ttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcctagccatgaaaattgagagaaactggatgaaaaaagagtttgagaatgca |
18655856 |
T |
|
| Q |
120 |
gaatatgaatgagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
|||||||| | || |||||||||||||||||| |
|
|
| T |
18655857 |
gaatatga--gtttaagtttttgtggtatgtgat |
18655888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 18731784 - 18731915
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||||||||||| || ||||||| | | |||||||| |||||| |||||||||| |||||||| |
|
|
| T |
18731784 |
ttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgaaaatcgagagaaactggatgaaaaaagagtttgagaatgca |
18731883 |
T |
|
| Q |
120 |
gaatatgaatgagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
|||||||| | || |||||||||||||||||| |
|
|
| T |
18731884 |
gaatatga--gtttaagtttttgtggtatgtgat |
18731915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 18679847 - 18679978
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatg--aaaagagttttagaatgca |
119 |
Q |
| |
|
|||||||||||||| | |||||||||||||| | |||||||||||||| || ||||||| | | |||||||| |||||| |||||||||| |||||||| |
|
|
| T |
18679847 |
ttggtaagtgaatcgataggaaaatgaagagaatgaggaaggtgattgcatagccatgaaaatagagagaaactggatgaaaaaagagtttgagaatgca |
18679946 |
T |
|
| Q |
120 |
gaatatgaatgagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
|||||||| | || |||||||||||||||||| |
|
|
| T |
18679947 |
gaatatga--gtttaagtttttgtggtatgtgat |
18679978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 18724365 - 18724432
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgaga |
89 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||||||||||| || ||||||||| |||||| |
|
|
| T |
18724365 |
ttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgaga |
18724432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1254 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold1254
Description:
Target: scaffold1254; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 210 - 336
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcaga |
121 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||| ||||||||| || ||||||||| |||||||||||| |||||||| || || | ||| |
|
|
| T |
210 |
ttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttg-----aga |
304 |
T |
|
| Q |
122 |
atatgaatgagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| |
|
|
| T |
305 |
atatgaatgagtaagtttttgtggtctgtgat |
336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 7419 - 7293
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatgaaaagagttttagaatgcaga |
121 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||| ||||||||| || ||||||||| |||||||||||| |||||||| || || | ||| |
|
|
| T |
7419 |
ttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttg-----aga |
7325 |
T |
|
| Q |
122 |
atatgaatgagtatgtttttgtggtatgtgat |
153 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| |
|
|
| T |
7324 |
atatgaatgagtaagtttttgtggtctgtgat |
7293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 28164642 - 28164721
Alignment:
| Q |
22 |
ttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgagacttgagagaaattggatga |
101 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||||||||| | ||| |||| ||||||||| |||| ||||||||||||| |
|
|
| T |
28164642 |
ttggtatgtgaatccataggaaattgaagaggaagaggaatgcgatcgtatagccatgagaattgacagaaattggatga |
28164721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 268661 - 268697
Alignment:
| Q |
46 |
tgaagaggaagaggaaggtgattgtattgccatgaga |
82 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| |
|
|
| T |
268661 |
tgaagaggaagaggaaggtgattgcatagccatgaga |
268697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 29274064 - 29274123
Alignment:
| Q |
23 |
tggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtattgccatgaga |
82 |
Q |
| |
|
||||||||||||||| | || | |||||||||||||||||||||||| || ||||||||| |
|
|
| T |
29274064 |
tggtaagtgaatccatatgagattgaagaggaagaggaaggtgattgcatagccatgaga |
29274123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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