View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_39 (Length: 242)
Name: NF9439_low_39
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4196820 - 4196596
Alignment:
| Q |
1 |
catctctatgaacaataggaggaacacagtcatgatgcagataagagaggccttctgcagaagcaagagctatcttatacctagttggccaatccaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4196820 |
catctctatgaacaataggaggaacacagtcatgatgcagataagagaggccttctgcagaagcaagagctatcttatacctagttggccaatccaacaa |
4196721 |
T |
|
| Q |
101 |
ccctcctttattgctatgcagcaaatcaccaagactaccatttggcatatactcataaaccaatagcttgcaatctctagtggtacagcaacaccatagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4196720 |
ccctcctttattgctatgcagcaaatcaccaagactaccatttggcatatactcataaaccaatagcttgcaatctctagtggtacagcaacaccatagc |
4196621 |
T |
|
| Q |
201 |
ttgacaatgttcttatgcctaatct |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
4196620 |
ttgacaatgttcttatgcctaatct |
4196596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34922583 - 34922805
Alignment:
| Q |
1 |
catctctatgaacaataggaggaacacagtcatgatgcagataagagaggccttctgcagaagcaagagctatcttatacctagttggccaatccaacaa |
100 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||| | | | ||||||||| || || ||||||||||||||||| |
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| T |
34922583 |
catctctatgaacaattgggggaacacagtcatgatggagataagagagtccatctgcagcatccacagctatcttgtatcttgttggccaatccaacaa |
34922682 |
T |
|
| Q |
101 |
ccctcctttattgctatgcagcaaatcaccaagactaccatttggcatatactcataaaccaatagcttgcaatctctagtggtacagcaacaccatagc |
200 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| || | |||||| || |||||||| |||||||||| | |
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| T |
34922683 |
ccctcctttactgctatgaagcaaatcaccaagactaccattttgcatatactcataaaccaagagttggcaatcccttgtggtacaacaacaccataac |
34922782 |
T |
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| Q |
201 |
ttgacaatgttcttatgcctaat |
223 |
Q |
| |
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|||||||||||||| || ||||| |
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| T |
34922783 |
ttgacaatgttcttgtgtctaat |
34922805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 20132550 - 20132490
Alignment:
| Q |
2 |
atctctatgaacaataggaggaacacagtcatgatgcagataagagaggccttctgcagaa |
62 |
Q |
| |
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|||||| || || ||||||||||||||||||||||| ||||| | || |||||||||||| |
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| T |
20132550 |
atctctgtggactataggaggaacacagtcatgatgtagatatgcaagtccttctgcagaa |
20132490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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