View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_4 (Length: 484)
Name: NF9439_low_4
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 469
Target Start/End: Complemental strand, 6164776 - 6164326
Alignment:
| Q |
20 |
accgagccactaacaaccgaaaacaactctgcaaaaaacagcagaagtgcacaccaaaggggaaaatgcagcaagcccaggcagctatccacgcaggcac |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6164776 |
accgagccactaacaaccgaaaacaactctgccaaaaacagcagaagtgcacaccaaaggggaaaatgcagcaagcccaggcagctatccacgcaggcac |
6164677 |
T |
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| Q |
120 |
agcagtnnnnnnncacctcccctactgctgcatccatctcagccgactgggagtccttcgaaggcaccattgtagattccaagtccactcaaaaaacata |
219 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6164676 |
agcagtaaaaaaacacctcccctactgctgcatccatctcagccgactgggagtccttcgaaggcaccattgtggattccaagtccactcaaaaaacata |
6164577 |
T |
|
| Q |
220 |
caaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacctcttccacaatagcatccacctcacaattaacatcattaaaaagaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6164576 |
caaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacctcttccacaatagcatccacctcacaattaacatcattaaaaagaa |
6164477 |
T |
|
| Q |
320 |
agaaatatgaaaataaaatccccatccatcctcctgtcttgttgattatttcacttcataaatcttgaaatcaatggcctaataatgaaaaaactcaaga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6164476 |
agaaatatgaaaataaaatccccatccatcctcctgtcttgttgattatttcacttcataaatcttgaaatcaatggcctaataatgaaacaactcaaga |
6164377 |
T |
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| Q |
420 |
tatatgcattgatcatat-tctcttgagccacattacgaaatccctctgac |
469 |
Q |
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| T |
6164376 |
tatatgcattgatcatatctctcttgagccacattacgaaatccctctgac |
6164326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 313 - 471
Target Start/End: Complemental strand, 6139168 - 6139007
Alignment:
| Q |
313 |
aaaagaaagaaatatgaaaataaaatccccatccatcctcctgtcttgttgattatttcacttcataaatcttgaaatcaatggcctaataatgaaaaaa |
412 |
Q |
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|||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| || |
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| T |
6139168 |
aaaagaaagaaataggaaagtaaaaaccccatccatcttcctgtcttgttgattatttcaatttataaatcttgaaatctatggcctaataatgaaacaa |
6139069 |
T |
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| Q |
413 |
ctcaagatatatgcattgatcatat---tctcttgagccacattacgaaatccctctgacct |
471 |
Q |
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| T |
6139068 |
ctcaagatatatgcattgatcatatctctctctcgagccactttacgaaatccctttgacct |
6139007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 313 - 469
Target Start/End: Original strand, 13282925 - 13283089
Alignment:
| Q |
313 |
aaaagaaagaaatatgaaaataaaat--ccccatccatcctcctgtcttgttgatta-----tttcacttcataaatcttgaaatcaatggcctaataat |
405 |
Q |
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||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
13282925 |
aaaagaaagaaatatgaaagtaaaaaaaccccatccatcttcctgtcttgttgattactccatttcacttcataaatcttgaaatctatggcctaataat |
13283024 |
T |
|
| Q |
406 |
gaaaaaactcaagatatatgcattgatcatat-tctcttgagccacattacgaaatccctctgac |
469 |
Q |
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||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |
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| T |
13283025 |
aaaacaactcaagatatatgcattgatcatatctctctcgagccactttacgaaatccctctgac |
13283089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 471
Target Start/End: Complemental strand, 6234174 - 6234113
Alignment:
| Q |
411 |
aactcaagatatatgcattgatcatat-tctcttgagccacattacgaaatccctctgacct |
471 |
Q |
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||||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||| |
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| T |
6234174 |
aactcaagatatatgcattgatcatatatctctcgagacactttacgaaatccctctgacct |
6234113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 471
Target Start/End: Complemental strand, 6241959 - 6241899
Alignment:
| Q |
412 |
actcaagatatatgcattgatcatat-tctcttgagccacattacgaaatccctctgacct |
471 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||||| |
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| T |
6241959 |
actcaagatatatgcattgatcatatctctctcgagccactttacggaatccctctgacct |
6241899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 471
Target Start/End: Complemental strand, 6255185 - 6255127
Alignment:
| Q |
414 |
tcaagatatatgcattgatcatat-tctcttgagccacattacgaaatccctctgacct |
471 |
Q |
| |
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|||||||||| ||||||||||||| ||||| ||| ||| |||||||||||||||||||| |
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| T |
6255185 |
tcaagatataagcattgatcatatctctctcgagtcactttacgaaatccctctgacct |
6255127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 368548 - 368435
Alignment:
| Q |
203 |
tccactcaaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacctcttccacaatagcatccacctcacaatt |
302 |
Q |
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||||||| ||| ||| | ||||||||||| ||| |||||| | |||||| |||||||| ||||||||||||| ||||| ||||||||||||||| |||| |
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| T |
368548 |
tccactcgaaatacaaagaaaccgggatgtgcaatctacctatgacccacctccaagccttgactttcacctcctccaccatagcatccacctcaaaatt |
368449 |
T |
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| Q |
303 |
aacatcattaaaaa |
316 |
Q |
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|||||||||||||| |
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| T |
368448 |
aacatcattaaaaa |
368435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 316
Target Start/End: Original strand, 14732903 - 14733009
Alignment:
| Q |
210 |
aaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacctcttccacaatagcatccacctcacaattaacatca |
309 |
Q |
| |
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|||||||||||||||||| |||||| | | ||||||||||||| ||||||||| ||||| | ||| ||||| | || ||||||||||||||||||||| |
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| T |
14732903 |
aaaaaacatacaaaccggaatgcgcgtccgacccaacacccacctccaagccaccactttgatctcctccaccacggcgtccacctcacaattaacatca |
14733002 |
T |
|
| Q |
310 |
ttaaaaa |
316 |
Q |
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||||||| |
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| T |
14733003 |
ttaaaaa |
14733009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 26447025 - 26447137
Alignment:
| Q |
204 |
ccactcaaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacctcttccacaatagcatccacctcacaatta |
303 |
Q |
| |
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|||||||||||| | |||||||| || |||||||||| || | ||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||| |
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| T |
26447025 |
ccactcaaaaaataagcaaaccggaatacgcattctacacatcgcccacttccaagccaacactttcaccttttccacaatgacatccacctcaaaatta |
26447124 |
T |
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| Q |
304 |
acatcattaaaaa |
316 |
Q |
| |
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||||||| |||| |
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| T |
26447125 |
gcatcattgaaaa |
26447137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 3700611 - 3700541
Alignment:
| Q |
246 |
cacccacttccaagccatgactttcacctcttccacaatagcatccacctcacaattaacatcattaaaaa |
316 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||| ||||||| |
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|
| T |
3700611 |
cacccacttccaagccaacactttcacctcttcaacaattgcatccacctctacattaacatcgttaaaaa |
3700541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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