View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_40 (Length: 241)
Name: NF9439_low_40
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_40 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 41698196 - 41698422
Alignment:
| Q |
18 |
cagtccccgagagttcatcccaatacatagggaatttggtttgattattatgaaaaagtgctttgagaagtgattctgattgagg---agtttgagtttg |
114 |
Q |
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| T |
41698196 |
cagtccccaagagttcatcccaatacatagggaatttggtttgattattatgaaaaagtgctttgagaagtgattctgattgaggaggagtttgagtttg |
41698295 |
T |
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| Q |
115 |
agcaaagggtctaagctgattttgaagtatggtgtcatcagccactctgttttttatcctttgggagaatctttggcctattaagaaacccatttcgtat |
214 |
Q |
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| T |
41698296 |
agcaaagggtctaagctgattttgaagtatggtgtcatcagccactctgttttttatcctttgggagaatctttggcctattaagaaacccatttcgtat |
41698395 |
T |
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| Q |
215 |
gaatctttgcatggtccaacttcaaac |
241 |
Q |
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| T |
41698396 |
gaatctttgcatggtccaacttcaaac |
41698422 |
T |
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