View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_42 (Length: 238)
Name: NF9439_low_42
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10005540 - 10005317
Alignment:
| Q |
1 |
atatggtgtctctccaactaccacaattgcatatgaaaaatcgttgaattttacataatctaatgaaggattctcctcgtagactaccttggtttctttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10005540 |
atatggtgtctctccaactaccacaattgcatatgaaaaatcattgaattttacataatctaatgaaggattctcctcgtagactaccttggtttctttg |
10005441 |
T |
|
| Q |
101 |
tcaactgcgtgttttatagcactcagaattggggtacctgtatatcagttaagcaatgttatagcaccgcaataatgattatttgacatcgtcttgtact |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10005440 |
tcgactgcgtgttttatagcactcagaattggggtacctgtatatcagttaagcaatgttatagcaccgcaataatgattatttgacatcgtcttgtact |
10005341 |
T |
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| Q |
201 |
aactagtgcacgtcagaacaatat |
224 |
Q |
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|||||| |||||||||||||||| |
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| T |
10005340 |
aactagcacacgtcagaacaatat |
10005317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 9999392 - 9999232
Alignment:
| Q |
1 |
atatggtgtctctccaactaccacaattgcatatgaaaaatcgttgaattttacataatctaatgaaggattctcctcgtagactaccttggtttctttg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9999392 |
atatggtgtctctccaactatcacaattgcatatgaaaaatcattggattttacatagtctaatgaaggattctcctcgtagaataccttggtttctttg |
9999293 |
T |
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| Q |
101 |
tcaactgcgtgttttatagcactcagaattggggtacctgtatatcagttaagcaatgtta |
161 |
Q |
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| T |
9999292 |
tcgactgcgttttttatagcactcagaattggagtacctgtatattagttaagcaatgtta |
9999232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 9992436 - 9992295
Alignment:
| Q |
2 |
tatggtgtctctccaactaccacaattgcatatgaaaaatcgttgaattttacataatctaatgaaggattctcctcgtagactaccttggtttctttgt |
101 |
Q |
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||||||||||||||||||||||| | |||||| |||||||| ||| ||||||| || |||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
9992436 |
tatggtgtctctccaactaccacgactgcatacgaaaaatcattggattttacgtagtctagtgaaggattctcctcatagactaccttggtttctttgt |
9992337 |
T |
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| Q |
102 |
caactgcgtgttttatagcactcagaattggggtacctgtat |
143 |
Q |
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|||||| || |||||||||||||||||||| ||||||||||| |
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| T |
9992336 |
caactgtgttttttatagcactcagaattgtggtacctgtat |
9992295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 10013881 - 10013735
Alignment:
| Q |
1 |
atatggtgtctctccaactaccacaattgcatatgaaaaatcgttgaattttacataatctaatgaaggattctcctcgtagactaccttggtttctttg |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||| ||| | ||| | ||| | ||| ||||| |||||||||| |
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| T |
10013881 |
atatggtttctctccaactaccacaattgcatatgaaaaaccattggattttacatagtcttgagtaggttgctctttgtattctaccacggtttctttg |
10013782 |
T |
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| Q |
101 |
tcaactgcgtgttttatagcactcagaattggggtacctgtatatca |
147 |
Q |
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||||||| || ||| |||||| ||||||||| |||||||||||||| |
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| T |
10013781 |
tcaactgtgtttttaatagcattcagaattgtagtacctgtatatca |
10013735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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