View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9439_low_43 (Length: 237)
Name: NF9439_low_43
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 41 - 217
Target Start/End: Complemental strand, 33968149 - 33967973
Alignment:
| Q |
41 |
agatatattccgtttttataatattaaatgttaaatcacgcttctcaaacttttttctcctcgcttccaagaacattttttggaatacctttgaggttga |
140 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33968149 |
agatatattccgtttttataatattaaaagttaaaccacgcttctcaaacttttttctcctcgcttccaagaacattttttggaatacctttgaggttga |
33968050 |
T |
|
| Q |
141 |
acaaggattctgtgaagcattttaaaagaaaacatatgcgctatcacttgcaaactatcaagagataaagagatttg |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33968049 |
aaaaggattctgtgaagcattttaaaagaaaacatatgcgctatcacttgcaaactatcaacagataaagagatttg |
33967973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33968209 - 33968160
Alignment:
| Q |
1 |
ccttggttacgattcaatcgtgatcaagcattagggagttagatatattc |
50 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33968209 |
ccttggtcacgattcaatcgtgatcaagcattagagagttagatatattc |
33968160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University