View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_47 (Length: 234)
Name: NF9439_low_47
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 8134728 - 8134647
Alignment:
| Q |
135 |
aatctactttatcttctttaaattttcttcacaccaaaacaactcttccactcatcacacccctctcaaaatggcaccattt |
216 |
Q |
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| T |
8134728 |
aatctactttatcttctttaaattttcttcacaccaaaacaactcttccactcatcacacccctctcaaaatggcaccattt |
8134647 |
T |
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Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 8134837 - 8134764
Alignment:
| Q |
12 |
aagcagagagtatcgtactattgtagctaaaaataacactcacactaaacacaataatattcaccttccctttc |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8134837 |
aagcagagagtatcgtactattgtagctaaaaataacactcacactaaacacaataatattcaccttccctttc |
8134764 |
T |
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