View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_48 (Length: 224)
Name: NF9439_low_48
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 56046437 - 56046247
Alignment:
| Q |
16 |
aaaggataacaaaagagttcaaactaggagattctgagctaaaaatacctgtgctgtatacatgcatcgcgggggaattttcatgtagtgcccaagtttg |
115 |
Q |
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| T |
56046437 |
aaaggataacaaaagagttcaaactaggagattctgagctaaaaatacctgtgctgtatacatgcatcgcgggggaattttcatgtagtgcccaagttta |
56046338 |
T |
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| Q |
116 |
agatcttgcaagaaagagagtgcatggacggtgctgattctcccataaatcttaaagagcaagtttgcaattggttttccaggaaggagat |
206 |
Q |
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| T |
56046337 |
agatcttgcaagaaagagagtgcatggacggtgctgattctcccataaatcttaaagagcaagtttgcaattggttttccaggaaggagat |
56046247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 55707670 - 55707554
Alignment:
| Q |
90 |
gaattttcatgtagtgcccaagtttgagatcttgcaagaaagagagtgcatggacggtgctgattctcccataaatcttaaagagcaagtttgcaattgg |
189 |
Q |
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| T |
55707670 |
gaattttcatgtagtgcctaagtttgagatctgacaagaaagagagcgtgtggacagtgttgattctcccataaatctggaagagcaagtttgctattgg |
55707571 |
T |
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| Q |
190 |
ttttccaggaaggagat |
206 |
Q |
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| T |
55707570 |
atttccaggaaggagat |
55707554 |
T |
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