View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_49 (Length: 224)
Name: NF9439_low_49
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_49 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10005830 - 10005607
Alignment:
| Q |
1 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10005830 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatcggcaa |
10005731 |
T |
|
| Q |
101 |
caccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaac |
200 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10005730 |
caccagaaccttcactaccaggaagccaagcaaccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaac |
10005631 |
T |
|
| Q |
201 |
gacacatttcactccgctgcatac |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
10005630 |
gacacatttcactccgctgcatac |
10005607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9999682 - 9999459
Alignment:
| Q |
1 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaa |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9999682 |
tgagaatcaccaacattcattggtaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatcggcaa |
9999583 |
T |
|
| Q |
101 |
caccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaac |
200 |
Q |
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| T |
9999582 |
caccagaaccttcactaccaggaagccaatcatccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaac |
9999483 |
T |
|
| Q |
201 |
gacacatttcactccgctgcatac |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
9999482 |
gacacatttcactccgctgcatac |
9999459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9992727 - 9992504
Alignment:
| Q |
1 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
9992727 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtcctagcaagcttaccagtaaatccataatcaccaaacaaaacatcagcaa |
9992628 |
T |
|
| Q |
101 |
caccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaac |
200 |
Q |
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|||||| |||||||||||||||||||||| |||| || ||||| |||||||| | ||||||||||||||| ||| ||||||||| |||| ||||||||| |
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| T |
9992627 |
caccagtaccttcactaccaggaagccaagcagcaacgagtccgtcaattttgttaagatatggttgtatggcaacaggtctaccagtgactaacacaac |
9992528 |
T |
|
| Q |
201 |
gacacatttcactccgctgcatac |
224 |
Q |
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|||||||||||||| || |||||| |
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| T |
9992527 |
gacacatttcactctgccgcatac |
9992504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 10014162 - 10013948
Alignment:
| Q |
10 |
ccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaacaccagaac |
109 |
Q |
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||||||||||| || ||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||| || |
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| T |
10014162 |
ccaacattcatcggtaactgatggacagtcttaaaccatgtccttgaaagcttaccagtaaatccataatcaccaaacaaaacatcagcaacaccagtac |
10014063 |
T |
|
| Q |
110 |
cttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccggtgattaacacaacgacacattt |
209 |
Q |
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|||||||||||||||||||| | || || ||||| ||||| || | |||| ||||||||||||||| |||||| || | |||||| ||||| |||||||| |
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| T |
10014062 |
cttcactaccaggaagccaagccgcaacgagtccgtcaatgttgtgaagaaatggttgtataacaacaggtcttccagagattaagacaacaacacattt |
10013963 |
T |
|
| Q |
210 |
cactccgctgcatac |
224 |
Q |
| |
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|||| ||| |||||| |
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| T |
10013962 |
cactgcgccgcatac |
10013948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 33353245 - 33353383
Alignment:
| Q |
1 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaa |
100 |
Q |
| |
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|||| ||| |||||||||||||| | ||||||||| | || |||||||| |||||||| || || || || |||||||||||||| |||||||| || | |
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| T |
33353245 |
tgaggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttcctgtgaaaccataatcaccaaataaaacatcagcca |
33353344 |
T |
|
| Q |
101 |
caccagaaccttcactaccaggaagccaaccagccacaa |
139 |
Q |
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|||| ||||||||||| || ||||||||||| |||| |
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| T |
33353345 |
caccttgtccttcactacctggtagccaaccagcaacaa |
33353383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 11244309 - 11244412
Alignment:
| Q |
1 |
tgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacatccgcaa |
100 |
Q |
| |
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|||| ||| |||||||||||||| | ||||| |||| || ||||||||||||| ||||||||| || || ||||| |||||||| | |||||| || | |
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| T |
11244309 |
tgaggatctccaacattcattgggagttgatcgacagatttgaaccatgtccttgcaagtttaccagtgaaaccatagtcaccaaaaagaacatctgcca |
11244408 |
T |
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| Q |
101 |
cacc |
104 |
Q |
| |
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|||| |
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|
| T |
11244409 |
cacc |
11244412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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