View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_5 (Length: 460)
Name: NF9439_low_5
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 33768172 - 33767731
Alignment:
| Q |
1 |
ggcattccaggagaaggtgtcatagtaattttggtcagtccagaaagtggccactgtgcagcataaactgtgacgcccttagatgtggcattaaggttag |
100 |
Q |
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| T |
33768172 |
ggcattccaggagaaggtgtcatagtaattttggtcagtccagaaagtggccactgtgcagcataaactgtgacgcccttagatgtggcattaaggttag |
33768073 |
T |
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| Q |
101 |
aataaaaggtgtggccattaatagaaacatcaaaggttctccagctaaaagggcttggatgtctgttgtcttgaaaatagagggaaatgtagtagtaagt |
200 |
Q |
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| T |
33768072 |
aataaaaggtgtggccattaatagaaacatcaaaggttctccagctaaaagggcttggatgtctgttgtcttgaaaatagagggaaatgtagtagtaagt |
33767973 |
T |
|
| Q |
201 |
acttggaagggacaatggtggccactgaatttcaagtgcttttcctttgctagtggttattcctgaactgaatgctttaactggaggaaggttccagaag |
300 |
Q |
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| T |
33767972 |
acttggaaggtacaatggtggccactgaatttcaagtgcttttcctttgctagtggttattcctgaactgaatgctttaactggaggaaggttccagaag |
33767873 |
T |
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| Q |
301 |
tctgaagatgttatatttgactggcttgccacaactggattttggtccttaaatggttgccacatccggttaaatttgtcatctggaaaactaagttcgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33767872 |
tctgaagatgttatatttgactggcttgccacaactggattttggtccttaaatggttgccacatccggttaaatttgtcatctggaaaactaagttcgc |
33767773 |
T |
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| Q |
401 |
atacagaaatcacaatcattagaattcacatcgtgcctattt |
442 |
Q |
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| T |
33767772 |
atacagaaatcacaatcattagaattcacatcgtgcctattt |
33767731 |
T |
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