View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9439_low_8 (Length: 401)
Name: NF9439_low_8
Description: NF9439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9439_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 39631687 - 39631326
Alignment:
| Q |
19 |
cacagaatattatgccactagaaatattnnnnnnnntaacaatttgtttgaatgagctttaacatttcggggagattaagatgccacgtacgtttaatca |
118 |
Q |
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| T |
39631687 |
cacagaatattatgccactagaaatattaaaaaaaataacaatttgtttgaatgagctttaacatttcggggagattaagatgccacgtacgtttaatca |
39631588 |
T |
|
| Q |
119 |
ataaacaaaagatgatcagccatcagta-tttaatcaattatagtattaagattagttgtacataccttaagttatgagttaaacaagtttcaaaggcat |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39631587 |
ataaacaaaagatgatcagccatcagtaatttaatcaattatagtattaagattagttgtacataccttaagttatgagttaaacaagtttcaaaggcat |
39631488 |
T |
|
| Q |
218 |
atattgtcaaggttttggaaatcttttgctccctttttaattctgaataagtcagaaagatttgcgtggtatcataattcattcatatctggtggcagtc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39631487 |
atattgtcaaggttttggaaatcttttgctccctttttaattctgaataagtcagaaagatttgagtggtatcataattcattcatatctggtggcagtc |
39631388 |
T |
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| Q |
318 |
ataggaacaaataaactatagagtccaatttgtccaactgaaatcatgtgacatacttgtag |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39631387 |
ataggaacaaataaactatagagtccaatttgtccaactgaaatcatgtgacatacttgtag |
39631326 |
T |
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