View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9440_1 (Length: 409)
Name: NF9440_1
Description: NF9440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9440_1 |
 | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 150 - 380
Target Start/End: Original strand, 24071637 - 24071867
Alignment:
| Q |
150 |
gcgcgtggagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggct |
249 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24071637 |
gcgcgtggagagggtacgttttaaacatacctgcatttacataatggcctccttgtctgagcaagcggaatgcaagtgcaacttgatagagttcatggct |
24071736 |
T |
|
| Q |
250 |
actcataaaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttgg |
349 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24071737 |
actcacaaaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccgctttgatctcgtcaacaaagtagtgttcaatgtcaaacttttgg |
24071836 |
T |
|
| Q |
350 |
atgatatcgatcaaataaaaacactccatcg |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24071837 |
atgatatcgatcaaataaaaacactccatcg |
24071867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 24071452 - 24071572
Alignment:
| Q |
21 |
acatcatcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaacta |
120 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24071452 |
acatcctcaccatgtgtttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactacattactaacta |
24071551 |
T |
|
| Q |
121 |
aatactcgcagtaatatatat |
141 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
24071552 |
aatactcccagtaatatatat |
24071572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 24079284 - 24079216
Alignment:
| Q |
21 |
acatcatcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaa |
89 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24079284 |
acatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaa |
24079216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 380
Target Start/End: Original strand, 28579893 - 28580239
Alignment:
| Q |
30 |
ccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactcgc |
129 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28579893 |
ccatgtttttctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactcct |
28579992 |
T |
|
| Q |
130 |
agtaatatatatctgtgcgtgcgcgtggagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgca |
229 |
Q |
| |
|
||||| ||||| | || ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28579993 |
agtaaattatatattcaaatg----tggagagggtacgtattaaactaacctgcatttacgtaatggcctccttgtctcagcaagcggaatgcaagtgca |
28580088 |
T |
|
| Q |
230 |
acttgatagagttcatggctactcataaaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagt |
329 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| || |||||||| |
|
|
| T |
28580089 |
acttcatagagttcatggctacttacaaaatcaataggattgttgttcaatatcaaatgtagtttttcaagagccactttgatctcctcggtaaagtagt |
28580188 |
T |
|
| Q |
330 |
gttcaatgtcaaacttttggatgatatcgatcaaataaaaacactccatcg |
380 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
28580189 |
gttcaatgccaaacctttggataatatcaatcaaataaaaactttccatcg |
28580239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 27 - 380
Target Start/End: Original strand, 28574838 - 28575186
Alignment:
| Q |
27 |
tcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatact |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28574838 |
tcaccatgtttttcttcaaacattcttttgttgcacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaa----atact |
28574933 |
T |
|
| Q |
127 |
cgcagtaatatatatctgtgcgtgcgcgtggagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagt |
226 |
Q |
| |
|
| | || || | | ||| || ||||||||||| ||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28574934 |
ccta-tagtaaaattatgtattcaaatgtagagagggtacgaattaaactaacctgcattgacatagtggcctccttgtctcagcaagcggaatgcaagt |
28575032 |
T |
|
| Q |
227 |
gcaacttgatagagttcatggctactcataaaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagt |
326 |
Q |
| |
|
| || || |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||| | |
|
|
| T |
28575033 |
gaaaattcatagagttcatggctattcacaaaatcaataggattggtgttcaatatcaaatgtagcttttcaagagccactttgatctcctcagcaaaat |
28575132 |
T |
|
| Q |
327 |
agtgttcaatgtcaaacttttggatgatatcgatcaaataaaaacactccatcg |
380 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28575133 |
agtgttcaatgccaaacctttggatgatatcgatcaaataaaaactctccatcg |
28575186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 21 - 380
Target Start/End: Original strand, 26315886 - 26316244
Alignment:
| Q |
21 |
acatcatcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaat--tatagttagtcactatattactaac |
118 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
26315886 |
acatcctcgccatgtttttcttcgaacattcttttgttacacttcaagctgtcaaataaatctgcaaaacaatattatagttagtcactatattactaac |
26315985 |
T |
|
| Q |
119 |
taaa-tactcgcagtaatatatatctgtgcgtgcgcgtggagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcgg |
217 |
Q |
| |
|
|||| |||| ||||| |||||| | || ||||||| ||| ||||||||| ||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
26315986 |
taaaatacttatagtaaaatatatattcaaatg----tggagagtgtaagtattaaactaacctgcatttacataatgtcctccttgtctgagcaagcgg |
26316081 |
T |
|
| Q |
218 |
aatgcaagtgcaacttgatagagttcatggctactcataaaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgt |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| ||| | || |||||||||||||||||||| | |
|
|
| T |
26316082 |
aatgcaagtgcaacttcgtagagttcatggatactcataaaatcattaggattggtgttcaatatcgaatatagcttctcaagagccactttgatctctt |
26316181 |
T |
|
| Q |
318 |
caacaaagtagtgttcaatgtcaaacttttggatgatatcgatcaaataaaaacactccatcg |
380 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26316182 |
caacaaagtagtgttcaatgttaagcctttggatgatatcgatcaaataaaaactctccatcg |
26316244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 20 - 380
Target Start/End: Original strand, 28586030 - 28586396
Alignment:
| Q |
20 |
gacatcatcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaact |
119 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28586030 |
gacatcctcgccatgtttttctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttggtcactatattactaact |
28586129 |
T |
|
| Q |
120 |
aaatactcgca--gtaatat-atatctgtgcgtgcgcgtg---gagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaa |
213 |
Q |
| |
|
|||||||| | |||| || |||| | | | | | |||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
28586130 |
aaatactcctatagtaaaattatatatatacagacacacacacgagaaggtacgcattaaacaaacctgcatttacgtaatggcctccttgtctcagcaa |
28586229 |
T |
|
| Q |
214 |
gcggaatgcaagtgcaacttgatagagttcatggctactcataaaatcaataggattggtgttcaatatcaaatgcaagttttcaagagccactttgatc |
313 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
28586230 |
gcggaatgcaagtgcaacttcatagatttcatggctactcgcaaaatcaattgaattggtgttcaatgtcaaatgtagcttttcaagagccactttgatc |
28586329 |
T |
|
| Q |
314 |
tcgtcaacaaagtagtgttcaatgtcaaacttttggatgatatcgatcaaataaaaacactccatcg |
380 |
Q |
| |
|
|| ||| |||| |||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
28586330 |
tcctcagcaaaatagtgttcaatgccaaacctttggataatatcgatcaaataaaaactttccatcg |
28586396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 167 - 380
Target Start/End: Original strand, 28568130 - 28568346
Alignment:
| Q |
167 |
gtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatca---a |
263 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
28568130 |
gtattaaacaaacctgcatttacgtaatggcctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaatta |
28568229 |
T |
|
| Q |
264 |
taggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatgatatcgatcaa |
363 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| || || ||| |||| ||||| ||||| ||||| ||||||| ||||| ||||| |
|
|
| T |
28568230 |
taggattggtgttcaatatcaaatgcagattttcaagagccacttttatttcctcagcaaaatagtgctcaataccaaacctttggataatatccatcaa |
28568329 |
T |
|
| Q |
364 |
ataaaaacactccatcg |
380 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
28568330 |
ataaaaactctccatcg |
28568346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 177 - 370
Target Start/End: Original strand, 20618387 - 20618580
Alignment:
| Q |
177 |
aacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatcaataggattggtgtt |
276 |
Q |
| |
|
||||||| || ||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| | ||||||||| |||||| || | |
|
|
| T |
20618387 |
aacctgcattgacataatagcctccttgtctgagcaaacggaatgcaagtgcaacttcatagagttcatggctactaacaaaatcaattggattgctgct |
20618486 |
T |
|
| Q |
277 |
caatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatgatatcgatcaaataaaaa |
370 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || |||||||||||||||||||| ||| | |||||||||| || ||||||| |||| |
|
|
| T |
20618487 |
caatatcaaaaattgtttctcaagagccactttgatttcctcaacaaagtagtgttcaataccaagcctttggatgatgtcaatcaaatgaaaa |
20618580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 28568004 - 28568100
Alignment:
| Q |
21 |
acatcatcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaa |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
28568004 |
acatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcattttattactaa |
28568100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 167 - 378
Target Start/End: Complemental strand, 4959 - 4745
Alignment:
| Q |
167 |
gtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatca---a |
263 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
4959 |
gtattaaacaaacctgcatttacgtaatggcctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaatta |
4860 |
T |
|
| Q |
264 |
taggattggtgttcaatatcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatgatatcgatcaa |
363 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| || || || ||| |||| ||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
4859 |
taggattggtgttcaatatcaaatgcagattttcaagagccacatttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcgatcaa |
4760 |
T |
|
| Q |
364 |
ataaaaacactccat |
378 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
4759 |
ataaaaactctccat |
4745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 185 - 378
Target Start/End: Complemental strand, 4737 - 4541
Alignment:
| Q |
185 |
tttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatca---ataggattggtgttcaata |
281 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
4737 |
tttacgtaatggcctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaattataggattggtgttcaata |
4638 |
T |
|
| Q |
282 |
tcaaatgcaagttttcaagagccactttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatgatatcgatcaaataaaaacactccat |
378 |
Q |
| |
|
||||||||| |||||||||||||| || || || ||| |||| ||||||||||| ||||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
4637 |
tcaaatgcagattttcaagagccacatttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcgatcaaataaaaactctccat |
4541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 3328 - 3270
Alignment:
| Q |
322 |
aaagtagtgttcaatgtcaaacttttggatgatatcgatcaaataaaaacactccatcg |
380 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
3328 |
aaagtagtgttcaatgccaaacctttggataatatcaatcaaataaaaactttccatcg |
3270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 2600881 - 2600819
Alignment:
| Q |
188 |
acataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggcta |
250 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||| ||| ||||||| || ||||||||||||| |
|
|
| T |
2600881 |
acatagtggcctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggcta |
2600819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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