View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9440_3 (Length: 317)
Name: NF9440_3
Description: NF9440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9440_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 34899655 - 34899339
Alignment:
| Q |
1 |
tcaactgacccactaattgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattat |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899655 |
tcaactgacccactagttgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattat |
34899556 |
T |
|
| Q |
101 |
ttgtaagtcttagcagacacttcttcatagannnnnnnngttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899555 |
ttgtaagtcttagcagacacttcttcatagattttttttgttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtt |
34899456 |
T |
|
| Q |
201 |
taagaaggatccaaatagcaccacaagaaacaattagagaagtgtcaaaacaaaagggnnnnnnnnttcattgatgaattgtatagccctgatttttaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
34899455 |
taagaaggatccaaatagcaccacaagaaacaattagagaagtgtcaaaacaaaagggaaaaaaaattcattgatgaattgtatagccctgatttttaga |
34899356 |
T |
|
| Q |
301 |
attgagcgagactcttc |
317 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
34899355 |
attgagcaagactcttc |
34899339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University