View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9441_low_10 (Length: 296)
Name: NF9441_low_10
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9441_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 2788354 - 2788633
Alignment:
| Q |
1 |
aactttgataatgtcaatggccaagaaaatagtttgatactatagaccatagtatactttgacaaaagccacacttaaaagaaaacgaa-cacacacaat |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2788354 |
aactttgataatgtcaatggccaagaaaatagtttgatactatagaccatagtatactttgacaaaagccacacttaaaagaaaacgaaacacacacaat |
2788453 |
T |
|
| Q |
100 |
tgaagcatgtcgcaaactcaacaacaaatggaattatggatatggtgccttttattgttcctgaagtaaattactttaatctatgtaaatttcagtttca |
199 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2788454 |
tgaagcatgtcgcaaactcagcaacaactggaattatggatatggtgccttttattgttcctgaagtaaattactttaatctatgtaaatttcagtttca |
2788553 |
T |
|
| Q |
200 |
acttctctcttatcttaattttcttttcctattcatgaattttagttttagataaaaaatccaaatcggaaccaacatat |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
2788554 |
acttctctcttatcttaattttcttttcctattcatgaattttagttttagattaaaaatccaaattggaaccaacatat |
2788633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 46121520 - 46121425
Alignment:
| Q |
166 |
taaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaattttagttttagataaaaaatccaaat |
265 |
Q |
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|||||||||||||| ||||| ||||||| |||||||| |||||||||||| ||||| ||| | | || ||||||||||||||||||||| || |||| |
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| T |
46121520 |
taaattactttaat-tatgtcaatttcattttcaactcctctcttatctttattttttttgc----ttatcaattttagttttagataaaaagtctaaat |
46121426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 64 - 279
Target Start/End: Original strand, 22365146 - 22365362
Alignment:
| Q |
64 |
aaaagccacacttaaaagaaaacgaa-cacacacaattgaagcatgtcgcaaactcaacaacaaatggaattatggatatggtgccttttattgttcctg |
162 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22365146 |
aaaagccacactaaaaagaaaacgaaacacacacaattgaagcatgtcgcaaactcagcaacaaatggaattatggatatggtgctttttattgttcctt |
22365245 |
T |
|
| Q |
163 |
aagtaaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaattttagttttagataaaaaatcca |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
22365246 |
aagtaaattactttaatctatgtaaatttcagtttcaacttctctattatcttgattttcttttcctattcatgaattttagttttagatcaaaagtcca |
22365345 |
T |
|
| Q |
263 |
aatcggaaccaacatat |
279 |
Q |
| |
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||| ||||| ||||||| |
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| T |
22365346 |
aattggaactaacatat |
22365362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22365024 - 22365085
Alignment:
| Q |
1 |
aactttgataatgtcaatggccaagaaaatagtttgatactatagaccatagtatactttga |
62 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22365024 |
aactttgataatgtcaatggtcaagaaaatagtttgatactatagaccatagtatactttga |
22365085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 29782312 - 29782217
Alignment:
| Q |
166 |
taaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaattttagttttagataaaaaatccaaat |
265 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||| |||||||||||| ||||| ||| | | || ||||||||||||||||||||| || |||| |
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| T |
29782312 |
taaattactttaat-tatgtcaatttcattttcaactcctctcttatctttattttttttgc----ttatcaattttagttttagataaaaagtctaaat |
29782218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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