View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9441_low_14 (Length: 279)
Name: NF9441_low_14
Description: NF9441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9441_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 34593921 - 34594182
Alignment:
| Q |
1 |
attccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggagaaagtaaaataattttgatcacaatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34593921 |
attccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggagaaagtaaaataattttgatcacaatatg |
34594020 |
T |
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| Q |
101 |
gaaaatgaagcaaagtaattgaacaatacatatcaatatagtgagtttctgttttttccattgattccttacctattccaattatcttcaatatcacctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34594021 |
gaaaatgaagcaaagtaattgaacaatacatatcaatatagtgagtttctgttttttccattgattccttacctattccaattatcttcaatatcacctg |
34594120 |
T |
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| Q |
201 |
ttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatgt |
262 |
Q |
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| T |
34594121 |
ttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatgt |
34594182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 34578391 - 34578478
Alignment:
| Q |
171 |
acctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccct |
258 |
Q |
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| T |
34578391 |
acctcttccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcccatcccct |
34578478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34578131 - 34578196
Alignment:
| Q |
1 |
attccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgct |
66 |
Q |
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| T |
34578131 |
attccatcctccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagtcatgct |
34578196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 32601041 - 32601134
Alignment:
| Q |
169 |
ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatgt |
262 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||| |
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| T |
32601041 |
ttacctattccagttatcttcaatatctcctgttgttctccaactatttcccacacttttggcccatgtagcaggatcttcccatcccctatgt |
32601134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 32590570 - 32590663
Alignment:
| Q |
169 |
ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatgt |
262 |
Q |
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| T |
32590570 |
ttacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatgt |
32590663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 32590371 - 32590442
Alignment:
| Q |
1 |
attccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggag |
72 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||||||| |
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| T |
32590371 |
attccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggag |
32590442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32600819 - 32600885
Alignment:
| Q |
1 |
attccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgcta |
67 |
Q |
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|||||||||||||||||||||||| ||||||||||| | ||| |||| |||||||||||||||| |
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| T |
32600819 |
attccatcctccaggtccagcataagatgcccatttgtcatttacatctattatagaagtcatgcta |
32600885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 24883439 - 24883380
Alignment:
| Q |
166 |
tccttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacact |
225 |
Q |
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|||| |||||| ||| |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
24883439 |
tcctcacctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact |
24883380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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